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AT5G14250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.741
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Proteasome component (PCI) domain protein
Curator
Summary (TAIR10)
Encodes subunit 3 of the COP9 signalosome.
Computational
Description (TAIR10)
CONSTITUTIVE PHOTOMORPHOGENIC 13 (COP13); CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:16552DNASU:831275eggNOG:ENOG410XRKYeggNOG:KOG2582EMBL:AF361759EMBL:AF361760EMBL:AF395059
EMBL:AF419585EMBL:AL163817EMBL:AY084910EMBL:AY113041EMBL:CP002688EnsemblPlants:AT5G14250EnsemblPlants:AT5G14250.1
entrez:831275ExpressionAtlas:Q8W575Gene3D:1.10.10.10GeneID:831275Genevisible:Q8W575GO:GO:0005829GO:GO:0006511
GO:GO:0007275GO:GO:0008180GO:GO:0009585GO:GO:0010388GO:GO:0010971hmmpanther:PTHR10758HOGENOM:HOG000030451
InParanoid:Q8W575IntAct:Q8W575InterPro:IPR000717InterPro:IPR011991OMA:LIHNGQFPaxDb:Q8W575Pfam:PF01399
Pfam:Q8W575PhylomeDB:Q8W575PIR:T48598PRIDE:Q8W575PRO:PR:Q8W575ProteinModelPortal:Q8W575Proteomes:UP000006548
Reactome:R-ATH-5696394Reactome:R-ATH-6781823RefSeq:NP_568296.1SMART:SM00088SMR:Q8W575STRING:3702.AT5G14250.1SUPFAM:SSF46785
TAIR:AT5G14250tair10-symbols:COP13tair10-symbols:CSN3tair10-symbols:FUS11UniGene:At.5163UniProt:Q8W575
Coordinates (TAIR10) chr5:+:4597970..4600561
Molecular Weight (calculated) 47743.80 Da
IEP (calculated) 6.32
GRAVY (calculated) -0.06
Length 429 amino acids
Sequence (TAIR10)
(BLAST)
001: MIGAVNSVEA VITSIQGLSG SPEDLSALHD LLRGAQDSLR AEPGVNFSTL DQLDASKHSL GYLYFLEVLT CGPVSKEKAA YEIPIIARFI NSCDAGQIRL
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)