suba logo
AT5G14120.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30962257 (2019): plastid
  • PMID:26748395 (2016): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15574830 (2004): plasma membrane
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT3G01930.2); Has 2697 Blast hits to 2602 proteins in 809 species: Archae - 24; Bacteria - 1400; Metazoa - 12; Fungi - 267; Plants - 611; Viruses - 0; Other Eukaryotes - 383 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKPCeggNOG:ENOG410XR5AEMBL:AB007650EMBL:CP002688
EnsemblPlants:AT5G14120EnsemblPlants:AT5G14120.1entrez:831262GeneID:831262
GO:GO:0005773GO:GO:0005774GO:GO:0016021Gramene:AT5G14120.1
hmmpanther:PTHR21576hmmpanther:PTHR21576:SF44HOGENOM:HOG000240321InterPro:IPR010658
InterPro:IPR020846KEGG:ath:AT5G14120OMA:FFTETNEPfam:PF06813
Pfscan:PS51257PhylomeDB:Q9FMT8ProMEX:Q9FMT8Proteomes:UP000006548
RefSeq:NP_196916.1STRING:3702.AT5G14120.1SUPFAM:SSF103473TAIR:AT5G14120
TMHMM:TMhelixUniGene:At.49020UniGene:At.70997UniProt:Q9FMT8
Coordinates (TAIR10) chr5:+:4556308..4558447
Molecular Weight (calculated) 63152.80 Da
IEP (calculated) 7.54
GRAVY (calculated) 0.52
Length 579 amino acids
Sequence (TAIR10)
(BLAST)
001: MASTTREKFV SFINNRWLVF VAAMWIQSCA GIGYLFGSIS PVIKSSLNYN QKELSRLGVA KDLGDSVGFI AGTLSEILPL WAALLVGAVQ NLIGYGWVWL
101: IVTGRAPILP LWAMCVLIFV GNNGETYFNT GALVSGVQNF PKSRGPVVGI LKGFAGLGGA IISQIYTMIH SSNPASLILM VAVTPAVVVV CLMFFIRPVG
201: GHKQIRPTDG ASFTFIYGVC LLLAAYLMSV MLIQDLVVVS HNVITVFTIV LFVILVVPIL VPIMTSFFTE TNEPDDTIEE PLVPKREDQE PGLQTPDLIL
301: SEVEDEKPKD VDLLPASERH KRIAHLQAQL MQAAAEGAVR VNRRRGPHRG EDFTLTQALV KADFWLIFFS LLLGSGSGLT VIDNLGQMSQ SLGYDNTHVL
401: VSMISIWNFL GRIGGGYFSE LVVRDYAYPR PVAMAVAQLI MSVGHIFFAY GWPGAMYIGT LLIGLGYGAH WAIVPATASE LFGLKKFGAL YNFLTLANPA
501: GSLVFSGMIA SSIYDREAER QAHGSVFDPD DALRCNGSIC FFLTSLIMSG FCIIACMLSM ILVRRTKSVY THLYGKTRT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)