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AT5G14080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G64320.1); Has 28709 Blast hits to 10499 proteins in 259 species: Archae - 3; Bacteria - 9; Metazoa - 215; Fungi - 279; Plants - 27316; Viruses - 0; Other Eukaryotes - 887 (source: NCBI BLink).
Protein Annotations
BioGrid:16535eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB007650EMBL:BX831119EMBL:BX834008EMBL:CP002688
EnsemblPlants:AT5G14080EnsemblPlants:AT5G14080.1entrez:831257Gene3D:1.25.40.10GeneID:831257Genevisible:Q9FMU2GO:GO:0009507
Gramene:AT5G14080.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF351HOGENOM:HOG000240468InParanoid:Q9FMU2InterPro:IPR002885InterPro:IPR011990
iPTMnet:Q9FMU2KEGG:ath:AT5G14080OMA:ELDTVGFPaxDb:Q9FMU2Pfam:PF01535Pfam:PF12854Pfam:PF13041
Pfam:Q9FMU2Pfscan:PS51375PhylomeDB:Q9FMU2PRIDE:Q9FMU2PRO:PR:Q9FMU2PROSITE:PS51375ProteinModelPortal:Q9FMU2
Proteomes:UP000006548RefSeq:NP_196912.2SMR:Q9FMU2STRING:3702.AT5G14080.1TAIR:AT5G14080TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.31979UniProt:Q9FMU2
Coordinates (TAIR10) chr5:-:4543265..4545256
Molecular Weight (calculated) 71367.70 Da
IEP (calculated) 7.79
GRAVY (calculated) -0.04
Length 634 amino acids
Sequence (TAIR10)
(BLAST)
001: MRPATELAVR IGRELLKVSG SSRAARIWSP LIEQSLHGLG FRHSISPSLV ARVIDPFLLN HHSLALGFFN WAAQQPGYSH DSISYHSIFK SLSLSRQFSA
101: MDALFKQVKS NKILLDSSVY RSLIDTLVLG RKAQSAFWVL EEAFSTGQEI HPDVCNRLLA GLTSDGCYDY AQKLFVKMRH KGVSLNTLGF GVYIGWFCRS
201: SETNQLLRLV DEVKKANLNI NGSIIALLIL HSLCKCSREM DAFYILEELR NIDCKPDFMA YRVIAEAFVV TGNLYERQVV LKKKRKLGVA PRSSDYRAFI
301: LDLISAKRLT EAKEVAEVIV SGKFPMDNDI LDALIGSVSA VDPDSAVEFL VYMVSTGKLP AIRTLSKLSK NLCRHDKSDH LIKAYELLSS KGYFSELQSY
401: SLMISFLCKA GRVRESYTAL QEMKKEGLAP DVSLYNALIE ACCKAEMIRP AKKLWDEMFV EGCKMNLTTY NVLIRKLSEE GEAEESLRLF DKMLERGIEP
501: DETIYMSLIE GLCKETKIEA AMEVFRKCME RDHKTVTRRV LSEFVLNLCS NGHSGEASQL LREREHLEHT GAHVVLLKCV ADAKEVEIGI RHMQWIKEVS
601: PSLVHTISSD LLASFCSSSD PDSILPFIRA IENT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)