suba logo
AT5G14070.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.995
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Thioredoxin superfamily protein
Curator
Summary (TAIR10)
Encodes glutaredoxin ROXY2. ROXY2, together with ROXY1 (AT3G02000), controls anther development. roxy1 roxy2 double mutants are sterile and do not produce pollen.
Computational
Description (TAIR10)
ROXY2; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: negative regulation of transcription, anther development; LOCATED IN: cellular_component unknown; EXPRESSED IN: tapetum, floral meristem, hypocotyl, anther, root; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Glutaredoxin (InterPro:IPR002109), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT3G02000.1); Has 1062 Blast hits to 1060 proteins in 157 species: Archae - 0; Bacteria - 4; Metazoa - 185; Fungi - 99; Plants - 740; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
Protein Annotations
BioGrid:16534eggNOG:COG0695eggNOG:KOG1752EMBL:AB007650EMBL:AF361802EMBL:AY055101EMBL:AY084985
EMBL:CP002688EMBL:EU332351EnsemblPlants:AT5G14070EnsemblPlants:AT5G14070.1entrez:831256Gene3D:3.40.30.10GeneID:831256
Genevisible:Q8LF89GO:GO:0005634GO:GO:0005737GO:GO:0009055GO:GO:0015035GO:GO:0045454GO:GO:0045892
Gramene:AT5G14070.1hmmpanther:PTHR10168hmmpanther:PTHR10168:SF62HOGENOM:HOG000095204InParanoid:Q8LF89IntAct:Q8LF89InterPro:IPR002109
InterPro:IPR011905InterPro:IPR012336iPTMnet:Q8LF89KEGG:ath:AT5G14070OMA:SWGSYMPPaxDb:Q8LF89Pfam:PF00462
Pfam:Q8LF89Pfscan:PS51354PhylomeDB:Q8LF89PRIDE:Q8LF89PRO:PR:Q8LF89PROSITE:PS51354ProteinModelPortal:Q8LF89
Proteomes:UP000006548RefSeq:NP_196911.1SMR:Q8LF89STRING:3702.AT5G14070.1SUPFAM:SSF52833TAIR:AT5G14070tair10-symbols:ROXY2
TIGRfam:TIGR02189TIGRFAMs:TIGR02189UniGene:At.26399UniProt:Q8LF89
Coordinates (TAIR10) chr5:+:4541915..4542337
Molecular Weight (calculated) 14970.50 Da
IEP (calculated) 8.65
GRAVY (calculated) 0.32
Length 140 amino acids
Sequence (TAIR10)
(BLAST)
001: MQYKTETRGS LSYNNNSKVM NNMNVFPSET LAKIESMAAE NAVVIFSVST CCMCHAIKRL FRGMGVSPAV HELDLLPYGV EIHRALLRLL GCSSGGATSP
101: GALPVVFIGG KMVGAMERVM ASHINGSLVP LLKDAGALWL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)