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AT5G13990.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.990
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : exocyst subunit exo70 family protein C2
Curator
Summary (TAIR10)
A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.
Computational
Description (TAIR10)
exocyst subunit exo70 family protein C2 (EXO70C2); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: cytosol, nucleus, exocyst; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein C1 (TAIR:AT5G13150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YIGIeggNOG:KOG2344EMBL:AB005230EMBL:BT003863EMBL:BT006148EMBL:CP002688EnsemblPlants:AT5G13990
EnsemblPlants:AT5G13990.1entrez:831247GeneID:831247GO:GO:0000145GO:GO:0005634GO:GO:0005829GO:GO:0006887
Gramene:AT5G13990.1hmmpanther:PTHR12542hmmpanther:PTHR12542:SF15HOGENOM:HOG000243677InterPro:IPR004140InterPro:IPR016159KEGG:ath:AT5G13990
KO:K07195OMA:CLDHHESPANTHER:PTHR12542Pfam:PF03081PhylomeDB:Q9FFX6Proteomes:UP000006548Reactome:R-ATH-5620916
RefSeq:NP_196903.1SMR:Q9FFX6STRING:3702.AT5G13990.1SUPFAM:SSF74788TAIR:AT5G13990tair10-symbols:ATEXO70C2tair10-symbols:EXO70C2
UniGene:At.31992UniProt:Q9FFX6
Coordinates (TAIR10) chr5:-:4514680..4516767
Molecular Weight (calculated) 79770.50 Da
IEP (calculated) 4.66
GRAVY (calculated) -0.69
Length 695 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKNDKDPDH DDKSKGDEKG DVVSDAHPSD DAHHQDGISN ENVDVVGNAE TDHQDPGDNN VDKVSQGEEA PEIRQTLESL SEELDQFLPT LSLHMEEHKD
101: STEEKGEDGY FQIPQFVGKF LDLFEEKLSK YDSGEPKTVW YQDPEEVSSL LEAVDRVSKL MGLLLNTKSC LDHHESLINH AGSIQQRAMA FLEDEFRIIL
201: EESVTKESVV VTDDSNSQRR STADQQDHQN DVVVSQDHDQ MLVPECGDQE IEYPGYPEDV VVVLRKIAEK MKAGGYGWEC REVYLVGRRN ILMRTLKQDC
301: EFEKVSIDEV QKMSWDTLER EIPIWNKTFK DCSSLFFPGE LKLAERIFPG DEGNLFCIVT HGLAIQFLGF AEAVAMTRRS TEKLFKILDI YETLRDSFPA
401: MEELFPEELR SELRNEVTSA RSRLGETAIH IFCDLEHSIK SDSSKTPVPG GAVHPLTRYT MNYLKYSCEY KDTLEQVFKS HSKMEREEEE PVESGNSAFA
501: SQLMRIMELL DGNLETKSKQ YKDIPLSCIF MMNNGRYIVQ KIKGSAEIHE VMGDTWCRRR SSELRNYHKN YQRETWGKLL GFLGHEGLMH NGKIVKPNLK
601: ERFKSFNATF DEIHKTQTTW VVNDEQLQSE LRVSITAVMI PAYRAFMARF GQYLDPGRQT EKYVKYQPED IEDLIDQLFE GNTSSSSTAT ARRRT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)