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AT5G13970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IY9QeggNOG:ENOG410Y85GEMBL:AB005230EMBL:AY079022EMBL:BT004512EMBL:CP002688EnsemblPlants:AT5G13970
EnsemblPlants:AT5G13970.1entrez:831245GeneID:831245Gramene:AT5G13970.1hmmpanther:PTHR13445hmmpanther:PTHR13445:SF3HOGENOM:HOG000090423
InterPro:IPR029338KEGG:ath:AT5G13970OMA:DIMDDGIPfam:PF15264PhylomeDB:Q9FFX8Proteomes:UP000006548RefSeq:NP_196901.1
STRING:3702.AT5G13970.1TAIR:AT5G13970UniGene:At.31996UniProt:Q9FFX8
Coordinates (TAIR10) chr5:-:4506383..4507804
Molecular Weight (calculated) 45745.30 Da
IEP (calculated) 4.18
GRAVY (calculated) -0.99
Length 404 amino acids
Sequence (TAIR10)
(BLAST)
001: MDESFRVRID KVFGSLASSS TSSAPVSSLW CLAEDEIDGN QRSGEKELSE SLNSFSDNGK QEHESDDLSI DEEKGRSSEL QKPSDYDDEE WEIKNSIGMD
101: STLDMEEELD DNDKVALGEK VYCCMKDVND DYETEADEWV ELPASFNERE KDPRANLIAA KLRLKEDAEA VNKLNSLHVS EELQDNLSMS TENEKPFVVS
201: EDNLLGAFKE SHVGSSDENG LKPILKRREN QADDSKSPKR VRFSSDVKDR TLTEGDNDSV MEASSPNEDK VEAVYPTGIP DYMRNPSKYT RYTFESGEVD
301: EESNRKAYMD FLNMIRSKDE SLVDPLMELP RSVAFVPKRK PMAESKVENI DKDCEGRRVA IAVDTIEDCT ISAMEEDEPE TAQHVTKRPG RQYRARAKED
401: PEEC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)