AT5G13950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02290.1); Has 147 Blast hits to 145 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 56; Fungi - 6; Plants - 81; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:4496196..4500206 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 104833.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.76 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.80 | ||||||||||||||||||||||||
| Length | 939 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAADQRRKRM NSANVIGTSS REHYRAKRKK NASPDGALRS GDHITLEWDR NRSKVVSKKE QVGLSFRHLR EFVDVVPPRR NVLAQVCPVP HETFQLENLS 101: EVLSNEVWRS CLSDGERNYL RQFLPEGVDV EQVVQALLDG ENFHFGNPSL DWGTAVCSGK AHPDQIVSRE ECLRADKRRY YSNLEKYHQD IIDYLQTLKE 201: KWESCKDPEK DIVKMMWGRS RGGNAQVNGS CQGLTAASGS SSWNEDDKPD SSDNMISPVV RCGEVQRRSK RSGLEKEKTQ NNGVNVGGKV RKKNVLPKDS 301: IQQTDGAKYM SYLKISKKQH QIVTSMKQSG KSIQSRALNR IFGNIDSLDV QPYGVFVEEE QKKLNAHWLH LVKDLPAAYA IWKRLQLQKR DIISSMGREL 401: KEKCNLWMED KQQQYAAENP LQKHDVQYNN GESLNPNQSG DMAPDGEDSG IFSQISGKNH SPSKDSSSYG DQITDSGRCL LVGTHSSQVS SPDCGNNINH 501: EDREEKQYSS PCSPSRCHSF NRTDVEVNNY SSSIQGQSLP QASFPNEPHA SDLEDADHVG KHCAPELENA SLDERIPCIA TSLGEGSQFC SGGDVWQPVG 601: GIRQSYISRQ AYTPSGGLSI IHHPEGDEVA KNCFIDLESN MPEEVDRRKM LQRNANNSFG SFPNNNQNEI LQSLFNGQGM VSRTTEQLHP LLKVPLNEEH 701: KQIMGIGFQQ EGNNNMMVGN QFSGQFQDQI PASHAFPQDQ QRQVDAFGQG SMSDNIYRGF LMQRPDWNPN CTQIGVTAQP LLSTGPLLNQ NWQFRSMWAN 801: TNGVGCTSQG SQTGTERDPS LLRVANNAEQ IIHRGSSSDQ SLFSVLSQCS QLRPSRSAFE PESSSHQMVA SGNYGMLMGG GSTQVSSNLV QPANPLDYLS 901: GSNPTTSLMP DDVVWMNQSR QNSGLHDPLG KLYPRSWNP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)