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AT5G13910.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (LEAFY PETIOLE). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and LEAFY PETIOLE. Acts as a positive regulator of gibberellic acid-induced germination.
Computational
Description (TAIR10)
LEAFY PETIOLE (LEP); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G28160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZF2eggNOG:ENOG410YPK8EMBL:AB005230EMBL:AF216581EMBL:AY560852EMBL:BT024919EMBL:CP002688
EnsemblPlants:AT5G13910EnsemblPlants:AT5G13910.1entrez:831238Gene3D:3.30.730.10GeneID:831238Genevisible:Q9M644GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009739GO:GO:0009740GO:GO:0009873GO:GO:0010030
Gramene:AT5G13910.1hmmpanther:PTHR31677hmmpanther:PTHR31677:SF5HOGENOM:HOG000239107InParanoid:Q9M644InterPro:IPR001471InterPro:IPR016177
KEGG:ath:AT5G13910KO:K09286OMA:DQVGTRFPaxDb:Q9M644Pfam:PF00847Pfam:Q9M644Pfscan:PS51032
PhylomeDB:Q9M644PRIDE:Q9M644PRINTS:PR00367PRO:PR:Q9M644PROSITE:PS51032ProteinModelPortal:Q9M644Proteomes:UP000006548
RefSeq:NP_196895.1SMART:SM00380SMR:Q9M644STRING:3702.AT5G13910.1SUPFAM:SSF54171TAIR:AT5G13910tair10-symbols:LEP
UniGene:At.64231UniProt:Q9M644
Coordinates (TAIR10) chr5:-:4482450..4483085
Molecular Weight (calculated) 23682.10 Da
IEP (calculated) 4.80
GRAVY (calculated) -0.91
Length 211 amino acids
Sequence (TAIR10)
(BLAST)
001: MNTTSSKSKK KQDDQVGTRF LGVRRRPWGR YAAEIRDPTT KERHWLGTFD TAEEAALAYD RAARSMRGTR ARTNFVYSDM PPSSSVTSIV SPDDPPPPPP
101: PPAPPSNDPV DYMMMFNQYS STDSPMLQPH CDQVDSYMFG GSQSSNSYCY SNDSSNELPP LPSDLSNSCY SQPQWTWTGD DYSSEYVHSP MFSRMPPVSD
201: SFPQGFNYFG S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)