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AT5G13890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.560
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Family of unknown function (DUF716)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Family of unknown function (DUF716) ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVGJeggNOG:ENOG4111RXUEMBL:AB005230EMBL:AK175246
EMBL:BT025873EMBL:CP002688EnsemblPlants:AT5G13890EnsemblPlants:AT5G13890.1
EnsemblPlants:AT5G13890.2EnsemblPlants:AT5G13890.3entrez:831236GeneID:831236
GO:GO:0016021Gramene:AT5G13890.1Gramene:AT5G13890.2Gramene:AT5G13890.3
hmmpanther:PTHR16007hmmpanther:PTHR16007:SF13InterPro:IPR006904KEGG:ath:AT5G13890
OMA:FIPEGCHPANTHER:PTHR16007Pfam:PF04819PhylomeDB:Q9FFY4
Proteomes:UP000006548RefSeq:NP_196893.1RefSeq:NP_850816.1RefSeq:NP_850817.1
TAIR:AT5G13890TMHMM:TMhelixUniGene:At.27778UniProt:Q9FFY4
Coordinates (TAIR10) chr5:-:4479940..4480872
Molecular Weight (calculated) 33925.60 Da
IEP (calculated) 7.32
GRAVY (calculated) 0.60
Length 310 amino acids
Sequence (TAIR10)
(BLAST)
001: MGEMMYKLFA SASLLTLGLY HLICTFFHLL KSPQSYAAKP FYPFPRLSSV TGNNHHNHNR LQNLPLFILI LSLFVAFLHE TLISFYSDPL VKGSTPVHRF
101: SSLNSAAVFF LFLIIAIYYL LSDSTSLIPL PSDLLFALAS VGFFLHYSAA SSSAAIQTSD LQAHCDSLSA RISALCSLLC LLLACRSRLF IADAALAAAI
201: CLQGLWQLQT GLSLYVDGFI PEGCHRLLDV QSGVEGSTQC DIQDSKLRAV SILDLMFTVH VVLVVILIFV TYTMVVMAAG VRRTGSYEAL PTNNADSNHI
301: QMKSLTGTQA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)