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AT5G13880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.989
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JE03eggNOG:ENOG410YRIUEMBL:CP002688EnsemblPlants:AT5G13880EnsemblPlants:AT5G13880.1entrez:831235GeneID:831235
Gramene:AT5G13880.1hmmpanther:PTHR33450hmmpanther:PTHR33450:SF5InParanoid:F4K5D0InterPro:IPR008480KEGG:ath:AT5G13880OMA:ITRFHRQ
PaxDb:F4K5D0Pfam:PF05553Proteomes:UP000006548RefSeq:NP_568291.1TAIR:AT5G13880UniGene:At.26592UniProt:F4K5D0
Coordinates (TAIR10) chr5:-:4477477..4478043
Molecular Weight (calculated) 21992.00 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.86
Length 188 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKASDFVKQ IINMLTCLAK DKTKELKRKT RAFKTRLVIF SLLHNRHMVV GSLSHKLKSN QTSKKIDHDN KDVQDYHDKN MVVVYSQNVN AMSSTPVSPH
101: VQYQYTEEED DEEGEEEKYP DLRHSLFEAE GSVIEMVKHS KEDNGEEFRL EDEIDKVADL FITRFHRQMW LQKQLSLESP DTPSPIHS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)