suba logo
AT5G13820.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : telomeric DNA binding protein 1
Curator
Summary (TAIR10)
Encodes a protein that specifically binds plant telomeric DNA repeats. It has a single Myb telomeric DNA-binding domain in C-terminus that prefers the sequence TTTAGGG.
Computational
Description (TAIR10)
telomeric DNA binding protein 1 (TBP1); FUNCTIONS IN: DNA binding, double-stranded telomeric DNA binding; INVOLVED IN: telomere maintenance; LOCATED IN: chromosome, telomeric region, nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Ubiquitin supergroup (InterPro:IPR019955), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRF-like 9 (TAIR:AT3G12560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:16505eggNOG:ENOG410IGAWeggNOG:ENOG4111C5TEMBL:AB005230EMBL:AF072536EMBL:AK227016EMBL:AY029195
EMBL:BT046176EMBL:CP002688EnsemblPlants:AT5G13820EnsemblPlants:AT5G13820.1entrez:831227Gene3D:1.10.10.60GeneID:831227
Genevisible:Q9FFY9GO:GO:0000723GO:GO:0000781GO:GO:0000783GO:GO:0003677GO:GO:0003691GO:GO:0006351
GO:GO:0006355GO:GO:0042162Gramene:AT5G13820.1hmmpanther:PTHR21717hmmpanther:PTHR21717:SF9HOGENOM:HOG000239616InParanoid:Q9FFY9
IntAct:Q9FFY9InterPro:IPR000626InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT5G13820OMA:CFEDTRT
PaxDb:Q9FFY9Pfam:Q9FFY9Pfscan:PS50053Pfscan:PS51294PhylomeDB:Q9FFY9PIR:T51231PRIDE:Q9FFY9
PRO:PR:Q9FFY9PROSITE:PS50053PROSITE:PS51294ProteinModelPortal:Q9FFY9Proteomes:UP000006548RefSeq:NP_196886.1SMART:SM00717
SMR:Q9FFY9STRING:3702.AT5G13820.1SUPFAM:SSF46689TAIR:AT5G13820tair10-symbols:ATBP-1tair10-symbols:ATBP1tair10-symbols:ATTBP1
tair10-symbols:HPPBF-1tair10-symbols:TBP1UniGene:At.19639UniProt:Q9FFY9
Coordinates (TAIR10) chr5:+:4461694..4464355
Molecular Weight (calculated) 70488.10 Da
IEP (calculated) 7.19
GRAVY (calculated) -0.58
Length 640 amino acids
Sequence (TAIR10)
(BLAST)
001: MVVKRKLNCG GSNGFDFPNI PKAPRSSRRK VSGKRSDDES EICAIDLLAS LAGKLLEESE SSSTSTYASE ADNLDHLGGL IKQELEDGYT TKPCKSEFFD
101: PGNPASKSTS ENTSVTCLPF SSFENDCILE QTPVSDCKRA SGLKSLVGSI TEETCVVNED AGSEQGANTF SLKDPSQLHS QSPESVLLDG DVKLAPCTDQ
201: VPNDSFKGYR NHSKLVCRDD DENYCKYYKF SDKCKSYRPL SRVGNRRIMQ SVRAISKLKC FEDTRTDGRL KALYRKRKLC YGYNPWKRET IHRKRRLSDK
301: GLVVNYDGGL SSESVSNSPE KGESENGDFS AAKIGLLSKD SRVKFSIKSL RIPELVIEVP ETATVGLLKR TVKEAVTALL GGGIRIGVLV QGKKVRDDNN
401: TLSQTGLSCR ENLGNLGFTL EPGLETLPVP LCSETPVLSL PTDSTKLSER SAASPALETG IPLPPQDEDY LINLGNSVEN NDELVPHLSD IPADEQPSSD
501: SRALVPVLAL ESDALALVPV NEKPKRTELS QRRTRRPFSV TEVEALVSAV EEVGTGRWRD VKLRSFENAS HRTYVDLKDK WKTLVHTASI SPQQRRGEPV
601: PQELLDRVLG AHRYWTQHQM KQNGKHQVAT TMVVEAGSSM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)