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AT5G13800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pheophytinase
Curator
Summary (TAIR10)
Encodes a pheophytinase that is involved in chlorophyll breakdown.
Computational
Description (TAIR10)
pheophytinase (PPH); FUNCTIONS IN: hydrolase activity, pheophytinase activity; INVOLVED IN: chlorophyll catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G36530.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G13800-MONOMERBioCyc:MetaCyc:AT5G13800-MONOMERBioGrid:16503EC:3.1.1.-eggNOG:COG0596eggNOG:KOG1454EMBL:AB005230
EMBL:AK317089EMBL:AY056386EMBL:AY070736EMBL:AY149934EMBL:CP002688EnsemblPlants:AT5G13800EnsemblPlants:AT5G13800.1
EnsemblPlants:AT5G13800.2entrez:831225ESTHER:arath-Q9FFZ1Gene3D:3.40.50.1820GeneID:831225Genevisible:Q9FFZ1GO:GO:0009507
GO:GO:0009535GO:GO:0009570GO:GO:0015996GO:GO:0080124Gramene:AT5G13800.1Gramene:AT5G13800.2hmmpanther:PTHR10992
hmmpanther:PTHR10992:SF879HOGENOM:HOG000006184InParanoid:Q9FFZ1InterPro:IPR000073InterPro:IPR029058KEGG:ath:AT5G13800MEROPS:S33.A34
OMA:PQGQLSFPaxDb:Q9FFZ1Pfam:PF12697Pfam:Q9FFZ1PhylomeDB:Q9FFZ1PRIDE:Q9FFZ1PRO:PR:Q9FFZ1
ProteinModelPortal:Q9FFZ1Proteomes:UP000006548RefSeq:NP_196884.1RefSeq:NP_850815.1STRING:3702.AT5G13800.1SUPFAM:SSF53474TAIR:AT5G13800
tair10-symbols:CRN1tair10-symbols:PPHUniGene:At.23976UniProt:Q9FFZ1
Coordinates (TAIR10) chr5:-:4452063..4454141
Molecular Weight (calculated) 54574.80 Da
IEP (calculated) 6.00
GRAVY (calculated) -0.30
Length 484 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIISLNVVP QCSVVTWSSK LATKRLVPNR SSLLFSGVKK SRLVIRSGNS DGYVVGENDD LGRIARRGES TSKVLIPGLP DESNGEIAAR ISHSHCEWKP
101: KLRVHYEKAG CDNLDAPAVL FLPGFGVGSF HYEKQLTDLG RDYRVWAIDF LGQGLSLPTE DPTTMTEETS SSEDKEPFWG FGDKTEPWAD QLVFSLDLWR
201: DQVQYFVEEV IGEPVYIAGN SLGGYVALYF AATHPHLVKG VTLLNATPFW GFFPNPVRSP KLARLFPWPG AFPLPERVKK ITELVWQKIS DPESIAEILK
301: QVYTDHSINV DKVFSRIVEV TQHPAAAASF ASIMLAPGGE LSFSEALSRC KENNVQICLM YGREDPWVRP LWGKKIKKEI PNAPYYEISP AGHCPHDEVP
401: EVVNYLMRGW IKHLESGGFE ALPLLEDTEE DWEESRIGRE IEFPRDGWKK AVNLWLYGSN YTYWRGVRES FRSSFIRVFG GKSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)