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AT5G13790.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AGAMOUS-like 15
Curator
Summary (TAIR10)
AGL15 (AGAMOUS-Like 15) is a member of the MADS domain family of regulatory factors. Although AGL15 is preferentially expressed during embryogenesis, AGL15 is also expressed in leaf primordia, shoot apical meristems and young floral buds, suggesting that AGL15 may play a role during post-germinative development. Transgenic plants that ectopically express AGL15 show delays in the transition to flowering, perianth abscission and senescence and fruit and seed maturation. Role in embryogenesis and gibberellic acid catabolism. Targets B3 domain transcription factors that are key regulators of embryogenesis.
Computational
Description (TAIR10)
AGAMOUS-like 15 (AGL15); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 18 (TAIR:AT3G57390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:16502eggNOG:COG5068eggNOG:KOG0014EMBL:AB005230EMBL:AB011484EMBL:CP002688EMBL:U20185
EMBL:U22528EnsemblPlants:AT5G13790EnsemblPlants:AT5G13790.1entrez:831224GeneID:831224Genevisible:Q38847GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0005737GO:GO:0006351GO:GO:0009793GO:GO:0009910GO:GO:0010047
GO:GO:0010227GO:GO:0010262GO:GO:0042803GO:GO:0045487GO:GO:0045892GO:GO:0045893GO:GO:0048577
GO:GO:0060862GO:GO:0060867GO:GO:0071365GO:GO:2000692Gramene:AT5G13790.1hmmpanther:PTHR11945hmmpanther:PTHR11945:SF237
HOGENOM:HOG000155301IntAct:Q38847InterPro:IPR002100InterPro:IPR002487KEGG:ath:AT5G13790ncoils:CoilOMA:DTACEDG
PaxDb:Q38847Pfam:PF00319Pfam:PF01486Pfam:Q38847Pfscan:PS50066Pfscan:PS51297PhylomeDB:Q38847
PIR:S71200PRIDE:Q38847PRINTS:PR00404PRO:PR:Q38847PROSITE:PS00350PROSITE:PS50066PROSITE:PS51297
ProteinModelPortal:Q38847Proteomes:UP000006548RefSeq:NP_196883.1scanprosite:PS00350SMART:SM00432SMR:Q38847STRING:3702.AT5G13790.1
SUPFAM:SSF55455TAIR:AT5G13790tair10-symbols:AGL15UniGene:At.28675UniProt:Q38847
Coordinates (TAIR10) chr5:-:4449128..4450802
Molecular Weight (calculated) 30330.60 Da
IEP (calculated) 8.61
GRAVY (calculated) -0.83
Length 268 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRGKIEIKR IENANSRQVT FSKRRSGLLK KARELSVLCD AEVAVIVFSK SGKLFEYSST GMKQTLSRYG NHQSSSASKA EEDCAEVDIL KDQLSKLQEK
101: HLQLQGKGLN PLTFKELQSL EQQLYHALIT VRERKERLLT NQLEESRLKE QRAELENETL RRQVQELRSF LPSFTHYVPS YIKCFAIDPK NALINHDSKC
201: SLQNTDSDTT LQLGLPGEAH DRRTNEGERE SPSSDSVTTN TSSETAERGD QSSLANSPPE AKRQRFSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)