AT5G13770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR-like) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT5G42310.1); Has 28118 Blast hits to 10756 proteins in 260 species: Archae - 2; Bacteria - 14; Metazoa - 159; Fungi - 283; Plants - 26809; Viruses - 0; Other Eukaryotes - 851 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:4445461..4447290 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69513.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.17 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 609 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAIASGSWVA TVNHHANPHS FTSPTKPIFF LSQKPHNFHV CSSRCSMVLE EDEKKSPSPK EDKWPFFEPG PNDLNRVLSR FLRDPETRKL SSEFYEKAKE 101: NSELRTTKHL ISYLVSSKSW DLLVSVCEDL REHKALPDGQ TCSNLIRSCI RDRKFRITHC LLSVFRSDKS LAVSASDAAM KGFNKLQMYS STIQVFDRLK 201: QSVGVEPSPG CYCRIMEAHE KIGENHKVVE LFQEFKSQRL SFLAKESGSI YTIVCSSLAK SGRAFEALEV LEEMKDKGIP ESSELYSMLI RAFAEAREVV 301: ITEKLFKEAG GKKLLKDPEM CLKVVLMYVR EGNMETTLEV VAAMRKAELK VTDCILCAIV NGFSKQRGFA EAVKVYEWAM KEECEAGQVT YAIAINAYCR 401: LEKYNKAEML FDEMVKKGFD KCVVAYSNIM DMYGKTRRLS DAVRLMAKMK QRGCKPNIWI YNSLIDMHGR AMDLRRAEKI WKEMKRAKVL PDKVSYTSMI 501: SAYNRSKELE RCVELYQEFR MNRGKIDRAM AGIMVGVFSK TSRIDELMRL LQDMKVEGTR LDARLYSSAL NALRDAGLNS QIRWLQESFD AAQTSTSKYS 601: NTKNTGTLS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)