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AT5G13730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : sigma factor 4
Curator
Summary (TAIR10)
Encodes sigma 4 factor, involved in regulating the activity of the plastid-encoded RNA polymerase PEP. Regulates the overall quantity of NDH complexes and thus influences NDH activity.
Computational
Description (TAIR10)
sigma factor 4 (SIG4); FUNCTIONS IN: DNA-directed RNA polymerase activity, sigma factor activity, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, transcription initiation; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, region 3/4 (InterPro:IPR013324), RNA polymerase sigma-70 factor (InterPro:IPR000943), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630); BEST Arabidopsis thaliana protein match is: RNApolymerase sigma subunit 2 (TAIR:AT1G08540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0568eggNOG:ENOG410II3UEMBL:AB006704EMBL:AB021119
EMBL:AF101075EMBL:AY059907EMBL:AY114689EMBL:CP002688
EnsemblPlants:AT5G13730EnsemblPlants:AT5G13730.1entrez:831218Gene3D:1.10.10.10
GeneID:831218Genevisible:Q9ZSL6GO:GO:0001053GO:GO:0003677
GO:GO:0003700GO:GO:0006352GO:GO:0009507GO:GO:0016987
GO:GO:0071482GO:GO:2001141hmmpanther:PTHR30603hmmpanther:PTHR30603:SF24
HOGENOM:HOG000270273InParanoid:Q9ZSL6InterPro:IPR000943InterPro:IPR007624
InterPro:IPR007627InterPro:IPR007630InterPro:IPR011991InterPro:IPR013324
InterPro:IPR013325InterPro:IPR014284InterPro:IPR016262KEGG:ath:AT5G13730
OMA:QLMKQEVPaxDb:Q9ZSL6Pfam:PF04539Pfam:PF04542
Pfam:PF04545Pfam:Q9ZSL6PhylomeDB:Q9ZSL6PIR:T51715
PIRSF:PIRSF000767PRIDE:Q9ZSL6PRINTS:PR00046PRO:PR:Q9ZSL6
PROSITE:PS00715ProteinModelPortal:Q9ZSL6Proteomes:UP000006548RefSeq:NP_196877.1
scanprosite:PS00715SMR:Q9ZSL6STRING:3702.AT5G13730.1SUPFAM:SSF88659
SUPFAM:SSF88946TAIR:AT5G13730tair10-symbols:SIG4tair10-symbols:SIGD
TIGRfam:TIGR02937TIGRFAMs:TIGR02937UniGene:At.43777UniGene:At.49018
UniProt:Q9ZSL6
Coordinates (TAIR10) chr5:-:4429132..4430744
Molecular Weight (calculated) 47168.10 Da
IEP (calculated) 10.15
GRAVY (calculated) -0.47
Length 419 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTIPTTAT ATMCPSPPVP TISPLLRTTH QCQPSPSLSS PFSIKLSTAL VCGDTTVDRV VDSSVMIKPE KWGIQSEKRR KRRRRRRVGY ERLEPEEEEN
101: AGVEAEAETI SVPVVGASRS GFLSRLEEVQ LCLYLKEGAK LENLGTSVEE NEMVSVLLAS GRGKKKRSAN EILCRRKEAR EKITRCYRRL VVSIATGYQG
201: KGLNLQDLIQ EGSIGLLRGA ERFDPDRGYK LSTYVYWWIK QAILRAIAHK SRLVKLPGSM WELTAKVAEA SNVLTRKLRR QPSCEEIAEH LNLNVSAVRL
301: AVERSRSPVS LDRVASQNGR MTLQEIVRGP DETRPEEMVK REHMKHEIEQ LLGSLTARES RVLGLYFGLN GETPMSFEEI GKSLKLSRER VRQINGIALK
401: KLRNVHNVND LKIYYSSSE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)