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AT5G13710.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : sterol methyltransferase 1
Curator
Summary (TAIR10)
SMT1 controls the level of cholesterol in plants
Computational
Description (TAIR10)
sterol methyltransferase 1 (SMT1); FUNCTIONS IN: sterol 24-C-methyltransferase activity; INVOLVED IN: sterol biosynthetic process, embryo development ending in seed dormancy; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sterol methyltransferase C-terminal (InterPro:IPR013705), Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: sterol methyltransferase 3 (TAIR:AT1G76090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BindingDB:Q9LM02BioCyc:ARA:AT5G13710-MONOMERBioCyc:ARA:GQT-948-MONOMERBioCyc:MetaCyc:AT5G13710-MONOMERBRENDA:2.1.1.41ChEMBL:CHEMBL4264DNASU:831216
EC:2.1.1.41eggNOG:ENOG410XP5GeggNOG:KOG1269EMBL:AB006704EMBL:AF090372EMBL:AF195648EMBL:AF494289
EMBL:AY120716EMBL:BT000058EMBL:CP002688EnsemblPlants:AT5G13710EnsemblPlants:AT5G13710.1EnsemblPlants:AT5G13710.2entrez:831216
Gene3D:3.40.50.150GeneID:831216Genevisible:Q9LM02GO:GO:0003838GO:GO:0005773GO:GO:0005783GO:GO:0009506
GO:GO:0009793GO:GO:0016126Gramene:AT5G13710.1Gramene:AT5G13710.2gramene_pathway:2.1.1.41gramene_pathway:PWY-2541gramene_plant_reactome:1119370
gramene_plant_reactome:6876431hmmpanther:PTHR10108hmmpanther:PTHR10108:SF908HOGENOM:HOG000171097InParanoid:Q9LM02InterPro:IPR013216InterPro:IPR013705
InterPro:IPR029063InterPro:IPR030384KEGG:ath:AT5G13710KO:K00559OMA:FHFCRFSPaxDb:Q9LM02Pfam:PF08241
Pfam:PF08498Pfam:Q9LM02Pfscan:PS51685PhylomeDB:Q9LM02PRIDE:Q9LM02PRO:PR:Q9LM02PROSITE:PS51685
ProteinModelPortal:Q9LM02Proteomes:UP000006548RefSeq:NP_001078579.1RefSeq:NP_196875.1SMR:Q9LM02STRING:3702.AT5G13710.1SUPFAM:SSF53335
TAIR:AT5G13710tair10-symbols:CPHtair10-symbols:SMT1UniGene:At.23211UniPathway:UPA00766UniProt:Q9LM02
Coordinates (TAIR10) chr5:-:4424048..4426866
Molecular Weight (calculated) 38270.50 Da
IEP (calculated) 6.12
GRAVY (calculated) -0.42
Length 336 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLASNLGGK IDKSDVLTAV EKYEQYHVFH GGNEEERKAN YTDMVNKYYD LATSFYEYGW GESFHFAQRW KGESLRESIK RHEHFLALQL GIQPGQKVLD
101: VGCGIGGPLR EIARFSNSVV TGLNNNEYQI TRGKELNRLA GVDKTCNFVK ADFMKMPFPE NSFDAVYAIE ATCHAPDAYG CYKEIYRVLK PGQCFAAYEW
201: CMTDAFDPDN AEHQKIKGEI EIGDGLPDIR LTTKCLEALK QAGFEVIWEK DLAKDSPVPW YLPLDKNHFS LSSFRLTAVG RFITKNMVKI LEYIRLAPQG
301: SQRVSNFLEQ AAEGLVDGGR REIFTPMYFF LARKPE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)