AT5G13680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 ASURE: cytosol What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : IKI3 family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
A subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1–ELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ABA-OVERLY SENSITIVE 1 (ABO1); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), IKI3 (InterPro:IPR006849); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:4410522..4415471 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 146634.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.91 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1319 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKNLKLFSEV PQNIQLHSTE EVVQFAAYDI DQSRLFFASS ANFVYALQLS SFQNESAGAK SAMPVEVCSI DIEPGDFITA FDYLAEKESL LIGTSHGLLL 0101: VHNVESDVTE LVGNIEGGVK CISPNPTGDL LGLITGLGQL LVMTYDWALM YEKALGEVPE GGYVRETNDL SVNCGGISIS WRGDGKYFAT MGEVYESGCM 0201: SKKIKIWESD SGALQSSSET KEFTQGILEW MPSGAKIAAV YKRKSDDSSP SIAFFERNGL ERSSFRIGEP EDATESCENL KWNSASDLLA GVVSCKTYDA 0301: IRVWFFSNNH WYLKQEIRYP REAGVTVMWD PTKPLQLICW TLSGQVSVRH FMWVTAVMED STAFVIDNSK ILVTPLSLSL MPPPMYLFSL SFSSAVRDIA 0401: YYSRNSKNCL AVFLSDGNLS FVEFPAPNTW EDLEGKDFSV EISDCKTALG SFVHLLWLDV HSLLCVSAYG SSHNKCLSSG GYDTELHGSY LQEVEVVCHE 0501: DHVPDQVTCS GFKASITFQT LLESPVLALA WNPSKRDSAF VEFEGGKVLG YASRSEIMET RSSDDSVCFP STCPWVRVAQ VDASGVHKPL ICGLDDMGRL 0601: SINGKNLCNN CSSFSFYSEL ANEVVTHLII LTKQDFLFIV DTKDVLNGDV ALGNVFFVID GRRRDEENMS YVNIWERGAK VIGVLNGDEA AVILQTMRGN 0701: LECIYPRKLV LSSITNALAQ QRFKDAFNLV RRHRIDFNVI VDLYGWQAFL QSAVAFVEQV NNLNHVTEFV CAMKNEDVTE TLYKKFSFSK KGDEVFRVKD 0801: SCSNKVSSVL QAIRKALEEH IPESPSRELC ILTTLARSDP PAIEESLLRI KSVREMELLN SSDDIRKKSC PSAEEALKHL LWLLDSEAVF EAALGLYDLN 0901: LAAIVALNSQ RDPKEFLPYL QELEKMPESL MHFKIDIKLQ RFDSALRNIV SAGVGYFPDC MNLIKKNPQL FPLGLLLITD PEKKLVVLEA WADHLIDEKR 1001: FEDAATTYLC CCKLEKASKA YRECGDWSGV LRVGALMKLG KDEILKLAYE LCEEVNALGK PAEAAKIALE YCSDISGGIS LLINAREWEE ALRVAFLHTA 1101: DDRISVVKSS ALECASGLVS EFKESIEKVG KYLTRYLAVR QRRLLLAAKL KSEERSVVDL DDDTASEASS NLSGMSAYTL GTRRGSAASV SSSNATSRAR 1201: DLRRQRKSGK IRAGSAGEEM ALVDHLKGMR MTDGGKRELK SLLICLVTLG EMESAQKLQQ TAENFQVSQV AAVELAHDTV SSESVDEEVY CFERYAQKTR 1301: STARDSDAFS WMLKVFISP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)