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AT5G13410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (plastidal marker)

At5g13410-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FKBP-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT4G19830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EC:5.2.1.8eggNOG:COG0545eggNOG:KOG0552EMBL:AK175218EMBL:AK316854EMBL:AL163572EMBL:BT012636
EMBL:CP002688EnsemblPlants:AT5G13410EnsemblPlants:AT5G13410.1entrez:831182GeneID:831182Genevisible:Q9LYR5GO:GO:0003755
GO:GO:0006457GO:GO:0009507GO:GO:0009535GO:GO:0009543GO:GO:0009579GO:GO:0031977Gramene:AT5G13410.1
hmmpanther:PTHR10516hmmpanther:PTHR10516:SF179HOGENOM:HOG000242116InParanoid:Q9LYR5InterPro:IPR001179InterPro:IPR023566iPTMnet:Q9LYR5
KEGG:ath:AT5G13410OMA:QFADMPAPANTHER:PTHR10516PaxDb:Q9LYR5Pfam:PF00254Pfam:Q9LYR5Pfscan:PS50059
PhylomeDB:Q9LYR5PIR:T48588PRIDE:Q9LYR5PRO:PR:Q9LYR5PROSITE:PS50059ProteinModelPortal:Q9LYR5Proteomes:UP000006548
RefSeq:NP_196845.1SMR:Q9LYR5STRING:3702.AT5G13410.1SUPFAM:SSF54534TAIR:AT5G13410UniGene:At.43833UniProt:Q9LYR5
Coordinates (TAIR10) chr5:-:4299830..4301706
Molecular Weight (calculated) 27779.90 Da
IEP (calculated) 7.87
GRAVY (calculated) -0.35
Length 256 amino acids
Sequence (TAIR10)
(BLAST)
001: MASISSFGCF PQSTALAGTS STTRCRTTVA ARLADQSDDF APLRSSGGNC GCVNNSGEFD RRKLLVSSVG LLIGALSYDS KDGDFASASQ FADMPALKGK
101: DYGKTKMKYP DYTETQSGLQ YKDLRVGTGP IAKKGDKVVV DWDGYTIGYY GRIFEARNKT KGGSFEGDDK EFFKFTLGSN EVIPAFEEAV SGMALGGIRR
201: IIVPPELGYP DNDYNKSGPR PMTFSGQRAL DFVLRNQGLI DKTLLFDVEL LKIVPN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)