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AT5G13330.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : related to AP2 6l
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.
Computational
Description (TAIR10)
related to AP2 6l (Rap2.6L); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G61890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:16452eggNOG:ENOG410IYVDeggNOG:ENOG410YY7DEMBL:AL163491EMBL:AY560861EMBL:BT011609EMBL:BT012250
EMBL:CP002688EnsemblPlants:AT5G13330EnsemblPlants:AT5G13330.1entrez:831174Gene3D:3.30.730.10GeneID:831174Genevisible:Q9LYU3
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009414GO:GO:0009651GO:GO:0009723
GO:GO:0009737GO:GO:0009751GO:GO:0009753GO:GO:0009873GO:GO:0045893GO:GO:0071497Gramene:AT5G13330.1
hmmpanther:PTHR31190HOGENOM:HOG000112331InParanoid:Q9LYU3IntAct:Q9LYU3InterPro:IPR001471InterPro:IPR016177KEGG:ath:AT5G13330
ncoils:CoilOMA:TYNQDILPaxDb:Q9LYU3Pfam:PF00847Pfam:Q9LYU3Pfscan:PS51032PhylomeDB:Q9LYU3
PIR:T48580PRIDE:Q9LYU3PRINTS:PR00367PRO:PR:Q9LYU3PROSITE:PS51032ProteinModelPortal:Q9LYU3Proteomes:UP000006548
RefSeq:NP_196837.1SMART:SM00380SMR:Q9LYU3STRING:3702.AT5G13330.1SUPFAM:SSF54171TAIR:AT5G13330tair10-symbols:Rap2.6L
UniGene:At.32083UniGene:At.67565UniGene:At.75194UniProt:Q9LYU3
Coordinates (TAIR10) chr5:+:4272384..4274461
Molecular Weight (calculated) 24288.90 Da
IEP (calculated) 9.12
GRAVY (calculated) -1.18
Length 212 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSALSRVIE NPTDPPVKQE LDKSDQHQPD QDQPRRRHYR GVRQRPWGKW AAEIRDPKKA ARVWLGTFET AEEAALAYDR AALKFKGTKA KLNFPERVQG
101: PTTTTTISHA PRGVSESMNS PPPRPGPPST TTTSWPMTYN QDILQYAQLL TSNNEVDLSY YTSTLFSQPF STPSSSSSSS QQTQQQQLQQ QQQQREEEEK
201: NYGYNYYNYP RE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)