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AT5G13320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Auxin-responsive GH3 family protein
Curator
Summary (TAIR10)
Encodes an enzyme capable of conjugating amino acids to 4-substituted benzoates. 4-HBA (4-hydroxybenzoic acid) and pABA (4-aminobenzoate) may be targets of the enzyme in Arabidopsis, leading to the production of pABA-Glu, 4HBA-Glu, or other related compounds. This enzyme is involved in disease-resistance signaling. It is required for the accumulation of salicylic acid, activation of defense responses, and resistance to Pseudomonas syringae. Salicylic acid can decrease this enzyme's activity in vitro and may act as a competitive inhibitor. Expression of PBS3/GH3.12 can be detected in cotyledons, true leaves, hypocotyls, and occasionally in some parts of roots from 10-day-old seedlings. No expression has been detected in root, stem, rosette or cauline leaves of mature 4- to 5-week-old plants.
Computational
Description (TAIR10)
AVRPPHB SUSCEPTIBLE 3 (PBS3); CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT1G23160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G13320-MONOMERBioCyc:MetaCyc:AT5G13320-MONOMEREC:6.3.2.-eggNOG:ENOG410IHE6eggNOG:ENOG410XQH0EMBL:AL163491EMBL:CP002688
EMBL:EU214910EnsemblPlants:AT5G13320EnsemblPlants:AT5G13320.1entrez:831173GeneID:831173Genevisible:Q9LYU4GO:GO:0009626
GO:GO:0010112GO:GO:0016874GO:GO:0034052GO:GO:0044419Gramene:AT5G13320.1hmmpanther:PTHR31901HOGENOM:HOG000238302
InParanoid:Q9LYU4InterPro:IPR004993iPTMnet:Q9LYU4KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-KEGG:ath:AT5G13320
KO:K14487ncoils:CoilOMA:NTKTEYLPANTHER:PTHR31901PaxDb:Q9LYU4PDB:4EPMPDB:4EQ4
PDB:4EQLPDB:4EWVPDB:4L39PDBsum:4EPMPDBsum:4EQ4PDBsum:4EQLPDBsum:4EWV
PDBsum:4L39Pfam:PF03321Pfam:Q9LYU4PhylomeDB:Q9LYU4PIR:T48579PRIDE:Q9LYU4PRO:PR:Q9LYU4
ProteinModelPortal:Q9LYU4Proteomes:UP000006548RefSeq:NP_196836.1SMR:Q9LYU4STRING:3702.AT5G13320.1TAIR:AT5G13320tair10-symbols:GDG1
tair10-symbols:GH3.12tair10-symbols:PBS3tair10-symbols:WIN3UniGene:At.32084UniProt:Q9LYU4
Coordinates (TAIR10) chr5:+:4268902..4270896
Molecular Weight (calculated) 65131.60 Da
IEP (calculated) 4.64
GRAVY (calculated) -0.25
Length 575 amino acids
Sequence (TAIR10)
(BLAST)
001: MKPIFDINET FEKQLKDLTS NVKSIQDNLL EEIITPNTKT EYLQRFLIDR FDKELFKKNV PIVSYEDIKP YLDRVVNGES SDVISARTIT GFLLSSGTSG
101: GAQKMMPWNN KYLDNLTFIY DLRMQVITKH VKGVEEGKGM MFLFTKQESM TPSGLPARVA TSSYFKSDYF KNRPSNWYYS YTSPDEVILC PNNTESLYCH
201: LLCGLVQRDE VVRTGSIFAS VMVRAIEVLK NSWEELCSNI RSGHLSNWVT DLGCQNSVSL VLGGPRPELA DTIEEICNQN SWKGIVKRLW PNTKYIETVV
301: TGSMGQYVPM LNYYCNDLPL VSTTYGSSET TFGINLDPLC KPEDVSYTFM PNMSYFEFIP MDGGDKNDVV DLEDVKLGCT YEPVVTNFAG LYRMRVGDIV
401: LVTGFYNNAP QFKFVRRENV VLSIDSDKTN EEDLFKAVSQ AKLVLESSGL DLKDFTSYAD TSTFPGHYVV YLEVDTKEGE EKETAQFELD EEALSTCCLV
501: MEESLDNVYK RCRFKDGSIG PLEIRVVRQG TFDSLMDFFI SQGASTGQYK TPRCIKSGKA LQVLETCVVA KFFSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)