suba logo
AT5G13200.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 0.415
nucleus 0.266
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GRAM domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GRAM domain family protein; CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: GRAM domain family protein (TAIR:AT2G22475.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
DNASU:831159eggNOG:ENOG410IG99eggNOG:ENOG410YCSJEMBL:AK229276EMBL:AL163491EMBL:AL391711EMBL:BT010714
EMBL:BT012428EMBL:CP002688EnsemblPlants:AT5G13200EnsemblPlants:AT5G13200.1entrez:831159GeneID:831159Genevisible:Q9LYV6
GO:GO:0009793GO:GO:0009845GO:GO:0010029GO:GO:0098755Gramene:AT5G13200.1hmmpanther:PTHR31969hmmpanther:PTHR31969:SF3
HOGENOM:HOG000239286InParanoid:Q9LYV6InterPro:IPR004182iPTMnet:Q9LYV6KEGG:ath:AT5G13200OMA:CYLSTITPaxDb:Q9LYV6
Pfam:PF02893Pfam:Q9LYV6PhylomeDB:Q9LYV6PIR:T48567PRIDE:Q9LYV6PRO:PR:Q9LYV6ProteinModelPortal:Q9LYV6
Proteomes:UP000006548RefSeq:NP_196824.1SMART:SM00568STRING:3702.AT5G13200.1TAIR:AT5G13200UniGene:At.25214UniProt:Q9LYV6
Coordinates (TAIR10) chr5:+:4207081..4208079
Molecular Weight (calculated) 30072.20 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.46
Length 272 amino acids
Sequence (TAIR10)
(BLAST)
001: MTGSQEDQPK IIIDQEQPKT LETEHQPEPS SSSPDQKKWG THVMGAPAAP VAHPDNQQAA AWVAGDNQQT QYQPYVIYSP VEHPTTNNPL EPVIGMFHTW
101: SRKAETVARN LWHNLKTGPS MSETAWGKVN LTAKAITKGG FESLFRQIFG TEPNETLKKT FACYLSTTTG PVAGTVYLSN ARVAFCSDRP LYFTAPSGQE
201: SWSYYRVVVP LANVATVNPV VVKETPPEKY IQLTTVDGHD FWFMGFVNYE KATHHLLTSV SDFQTAHGSV SG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)