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AT5G13170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.961
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : senescence-associated gene 29
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
senescence-associated gene 29 (SAG29); LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: MtN3/saliva-related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), RAG1-activating protein-1-related (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: homolog of Medicago truncatula MTN3 (TAIR:AT5G23660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:16434eggNOG:ENOG4111M4ReggNOG:KOG1623EMBL:AF118824EMBL:AL391711EMBL:AY045949EMBL:AY087836
EMBL:AY113934EMBL:CP002688EnsemblPlants:AT5G13170EnsemblPlants:AT5G13170.1entrez:831156GeneID:831156Genevisible:Q9FY94
GO:GO:0000139GO:GO:0005887GO:GO:0008515GO:GO:0009793GO:GO:0010150GO:GO:0010431GO:GO:0015770
GO:GO:0034219GO:GO:0051119GO:GO:0071215GO:GO:0071446GO:GO:0071470Gramene:AT5G13170.1hmmpanther:PTHR10791
hmmpanther:PTHR10791:SF34HOGENOM:HOG000237944InParanoid:Q9FY94InterPro:IPR004316KEGG:ath:AT5G13170KO:K15382OMA:EVHPIDD
PaxDb:Q9FY94Pfam:PF03083Pfam:Q9FY94PhylomeDB:Q9FY94PRO:PR:Q9FY94ProteinModelPortal:Q9FY94Proteomes:UP000006548
RefSeq:NP_196821.1STRING:3702.AT5G13170.1TAIR:AT5G13170tair10-symbols:AtSWEET15tair10-symbols:SAG29tair10-symbols:SWEET15TMHMM:TMhelix
UniGene:At.46857UniProt:Q9FY94
Coordinates (TAIR10) chr5:-:4181331..4183171
Molecular Weight (calculated) 32938.10 Da
IEP (calculated) 8.19
GRAVY (calculated) 0.69
Length 292 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVMINHHFL AFIFGILGNV ISFLVFLAPV PTFYRIYKRK STESFQSLPY QVSLFSCMLW LYYALIKKDA FLLITINSFG CVVETLYIAM FFAYATREKR
101: ISAMKLFIAM NVAFFSLILM VTHFVVKTPP LQVSVLGWIC VAISVSVFAA PLMIVARVIK TKSVEYMPFT LSFFLTISAV MWFAYGLFLN DICIAIPNVV
201: GFVLGLLQMV LYLVYRNSNE KPEKINSSEQ QLKSIVVMSP LGVSEVHPVV TESVDPLSEA VHHEDLSKVT KVEEPSIENG KCYVEATRPE TV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)