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AT5G13150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : exocyst subunit exo70 family protein C1
Curator
Summary (TAIR10)
A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.
Computational
Description (TAIR10)
exocyst subunit exo70 family protein C1 (EXO70C1); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: exocyst; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein C2 (TAIR:AT5G13990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YIGIeggNOG:KOG2344EMBL:AL391711EMBL:CP002688EnsemblPlants:AT5G13150EnsemblPlants:AT5G13150.1entrez:831154
GeneID:831154GO:GO:0000145GO:GO:0006887GO:GO:0090406Gramene:AT5G13150.1hmmpanther:PTHR12542hmmpanther:PTHR12542:SF15
HOGENOM:HOG000243677InterPro:IPR004140InterPro:IPR016159KEGG:ath:AT5G13150KO:K07195OMA:CENELNSPANTHER:PTHR12542
Pfam:PF03081PhylomeDB:Q9FY95Proteomes:UP000006548Reactome:R-ATH-5620916RefSeq:NP_196819.1SMR:Q9FY95STRING:3702.AT5G13150.1
SUPFAM:SSF74788TAIR:AT5G13150tair10-symbols:ATEXO70C1tair10-symbols:EXO70C1UniGene:At.49743UniProt:Q9FY95
Coordinates (TAIR10) chr5:-:4172969..4174930
Molecular Weight (calculated) 75009.60 Da
IEP (calculated) 5.20
GRAVY (calculated) -0.73
Length 653 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKSGNHHHA NESSENHDHK SEDHENKQHS DELHSSTPES QSESSEHSLV EVMEAVVDFI QTLSSEKDPL GEISPAVESF PEAVDSLVSK MESSGLGRDE
101: TEDSVFIDAV NRISKSVMRL RELKLDSTPV SSWLNRASSV QHRAVSLLDE EFRHLLDRSR EEEKKNNNNN NHHDGSNSDH NNSSTNDSDR CVLQDHEEAE
201: EESFHDFSPE SISTLKKIAG AMISAGYEAE CCMSYEMSRR HAFKEELTEV GFEGINVEDV QRIGWESLEG EIASWISIVR RCSTVLFPGE LSLCNAVFPD
301: QDHSSVRKRL FTGLVSAVTI RFLDFSGAVV LTKRSSEKLF KFLDMYETLR DLIPAVEQSD SDLIQEIKLA QTRLGEAAVT IFGELEKSIK SDNGRTPVPS
401: GAVHPLTRYT MNYLKYACEY KETLDQVFQH YEANQTDNKP EPETKPRQQQ REDDEEYKVS AFARQMIRVM ELLDANLEIK SRLYRDPSLR FIFLMNNGRY
501: ILQKIKGSIE IRDLMGQSWT RKRSTELRQY HKSYQRETWG KVLQCMNQEG LQVNGKVSKP VLKERFKIFN AMFDEIHKTQ STWIVSDEQM QSELRVSISS
601: LVIPAYRSFF GRYKQHLDSG KQTDKYVKYQ PEDIESFIDD LFDGNPTSMA RKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)