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AT5G13120.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cyclophilin 20-2
Curator
Summary (TAIR10)
Encodes a lumenal cyclophilin with peptidyl-prolyl isomerase activity that is associated with the NAD(P)H dehydrogenase complex in stromal regions of the thylakoid membrane. It is likely to be important for the accumulation of the hydrophobic domain of the NAD(P)H dehydrogenase complex. This complex is associated with PSI and is responsible for the reduction of plastoquinone.
Computational
Description (TAIR10)
cyclophilin 20-2 (CYP20-2); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, NAD(P)H dehydrogenase complex assembly; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: rotamase CYP 4 (TAIR:AT3G62030.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G13120-MONOMERBioCyc:ARA:GQT-1134-MONOMERBioGrid:16429EC:5.2.1.8eggNOG:ENOG410Z0G4eggNOG:KOG0880EMBL:AF367307
EMBL:AL391711EMBL:AY059152EMBL:AY088365EMBL:AY568517EMBL:CP002688EnsemblPlants:AT5G13120EnsemblPlants:AT5G13120.1
EnsemblPlants:AT5G13120.2entrez:831151ExpressionAtlas:Q9ASS6Gene3D:2.40.100.10GeneID:831151Genevisible:Q9ASS6GO:GO:0003755
GO:GO:0006457GO:GO:0006810GO:GO:0009507GO:GO:0009533GO:GO:0009534GO:GO:0009535GO:GO:0009579
GO:GO:0010275GO:GO:0031977GO:GO:0042277GO:GO:0043424hmmpanther:PTHR11071HOGENOM:HOG000065981InParanoid:Q9ASS6
IntAct:Q9ASS6InterPro:IPR002130InterPro:IPR020892InterPro:IPR024936InterPro:IPR029000iPTMnet:Q9ASS6KEGG:ath:AT5G13120
KO:K03768MINT:MINT-8062155OMA:QSKVTHKPANTHER:PTHR11071PaxDb:Q9ASS6Pfam:PF00160Pfam:Q9ASS6
Pfscan:PS50072PhylomeDB:Q9ASS6PRIDE:Q9ASS6PRINTS:PR00153PRO:PR:Q9ASS6PROSITE:PS00170PROSITE:PS50072
ProteinModelPortal:Q9ASS6Proteomes:UP000006548RefSeq:NP_001190299.1RefSeq:NP_196816.1scanprosite:PS00170SMR:Q9ASS6STRING:3702.AT5G13120.1
SUPFAM:SSF50891TAIR:AT5G13120tair10-symbols:ATCYP20-2tair10-symbols:CYP20-2TCDB:3.D.1.8.1UniGene:At.10074UniGene:At.67814
UniProt:Q9ASS6
Coordinates (TAIR10) chr5:-:4162714..4164720
Molecular Weight (calculated) 28307.70 Da
IEP (calculated) 9.82
GRAVY (calculated) -0.30
Length 259 amino acids
Sequence (TAIR10)
(BLAST)
001: MATLSMTLSN PKSLSAPPRR LSPINTSAFT STSFRLRTKS SFDSISFSSS TPFSASSLLL HTSYTKRNHR CFSVQSNAEV VTEPQSKITH KVYFDISVGN
101: PVGKLAGRIV IGLYGDDVPQ TVENFRALCT GEKGFGYKGS TFHRVIRDFM IQGGDFEKGN GTGGKSVYGR TFKDENFKLS HVGPGVLSMA NAGPNTNGSQ
201: FFICTIKTSW LDGRHVVFGQ VIEGMEVVKL IEEQETDRGD RPRKKVVIAD CGQLPMSEA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)