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AT5G12860.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:22923678 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid envelope
  • PMID:16618929 (2006): unclear
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : dicarboxylate transporter 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
dicarboxylate transporter 1 (DiT1); FUNCTIONS IN: oxoglutarate:malate antiporter activity; INVOLVED IN: N-terminal protein myristoylation, malate transport, response to nematode; LOCATED IN: mitochondrion, chloroplast, plastid, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/sulphate symporter (InterPro:IPR001898); BEST Arabidopsis thaliana protein match is: dicarboxylate transport 2.1 (TAIR:AT5G64290.1); Has 6431 Blast hits to 6401 proteins in 1396 species: Archae - 84; Bacteria - 5538; Metazoa - 82; Fungi - 8; Plants - 142; Viruses - 1; Other Eukaryotes - 576 (source: NCBI BLink).
Protein Annotations
BioGrid:16404eggNOG:COG0471eggNOG:ENOG410IFDXEMBL:AF370494EMBL:AL353013EMBL:CP002688EnsemblPlants:AT5G12860
EnsemblPlants:AT5G12860.1entrez:831126ExpressionAtlas:Q9LXV3GeneID:831126Genevisible:Q9LXV3GO:GO:0005739GO:GO:0006814
GO:GO:0009507GO:GO:0009534GO:GO:0009536GO:GO:0009624GO:GO:0009706GO:GO:0009941GO:GO:0015131
GO:GO:0015139GO:GO:0015140GO:GO:0015729GO:GO:0015742GO:GO:0016020GO:GO:0016021GO:GO:0019676
GO:GO:0071423GO:GO:1902356hmmpanther:PTHR10283hmmpanther:PTHR10283:SF76HOGENOM:HOG000117912InParanoid:Q9LXV3InterPro:IPR001898
iPTMnet:Q9LXV3OMA:CAMFLTSPaxDb:Q9LXV3Pfam:PF00939Pfam:Q9LXV3PhylomeDB:Q9LXV3PIR:T49900
PRIDE:Q9LXV3PRO:PR:Q9LXV3ProteinModelPortal:Q9LXV3Proteomes:UP000006548RefSeq:NP_568283.2SABIO-RK:Q9LXV3STRING:3702.AT5G12860.1
SwissPalm:Q9LXV3TAIR:AT5G12860tair10-symbols:DiT1TIGRfam:TIGR00785TIGRFAMs:TIGR00785TMHMM:TMhelixUniGene:At.5282
UniProt:Q9LXV3
Coordinates (TAIR10) chr5:-:4059927..4061919
Molecular Weight (calculated) 59216.40 Da
IEP (calculated) 10.20
GRAVY (calculated) 0.78
Length 557 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLALSGSC SLAFPLKSRS LSLPRPPSSS LNLTKPLRSL DSRFSLLKSP LPVSLRRRSS TLVKASSTVA SASSSPTPPL VPAPVPWQGA AIKPLLASIA
101: TGLILWFVPV PEGVTRNAWQ LLAIFLATIV GIITQPLPLG AVALMGLGAS VLTKTLTFAA AFSAFGDPIP WLIALAFFFA RGFIKTGLGN RVAYQFVRLF
201: GSSSLGLGYS LVFSEALLAP AIPSVSARAG GIFLPLVKSL CVACGSNVGD GTEHRLGSWL MLTCFQTSVI SSSMFLTAMA ANPLSANLAF NTIKQTIGWT
301: DWAKAAIVPG LVSLIVVPFL LYLIYPPTVK SSPDAPKLAQ EKLDKMGPMS KNELIMAATL FLTVGLWIFG AKLGVDAVTA AILGLSVLLV TGVVTWKECL
401: AESVAWDTLT WFAALIAMAG YLNKYGLIEW FSQTVVKFVG GLGLSWQLSF GILVLLYFYT HYFFASGAAH IGAMFTAFLS VSTALGTPPY FAALVLAFLS
501: NLMGGLTHYG IGSAPIFYGA NYVPLAKWWG YGFLISIVNI LIWLGVGGAW WKFIGLW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)