suba logo
AT5G12460.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF604)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF604); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT2G37730.1); Has 562 Blast hits to 553 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 108; Fungi - 170; Plants - 273; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YRJGeggNOG:KOG2246EMBL:CP002688EMBL:DQ446945EMBL:KP762452EnsemblPlants:AT5G12460EnsemblPlants:AT5G12460.1
entrez:831121GeneID:831121Gramene:AT5G12460.1hmmpanther:PTHR10811hmmpanther:PTHR10811:SF16HOGENOM:HOG000239947InterPro:IPR006740
KEGG:ath:AT5G12460OMA:CETPHIFPfam:PF04646Proteomes:UP000006548RefSeq:NP_568279.2TAIR:AT5G12460UniGene:At.54829
UniProt:Q1PDX3
Coordinates (TAIR10) chr5:+:4043057..4044583
Molecular Weight (calculated) 50860.80 Da
IEP (calculated) 8.37
GRAVY (calculated) -0.35
Length 441 amino acids
Sequence (TAIR10)
(BLAST)
001: MTHNLFAPLD LSFSSSSSSS SSSVSLSLQI TREPPTNISH LFFVIVGSTK TWRYRRGYIE PWWRPNITKG YVFLERPPGP DLLPWPQQSP PFSVNKESFI
101: TNKFKTQIRL FYSLQESFKK ASKETRWFVI GDDDTLFFLD NLVKALDRYN HKKHYYVGMN SENVWSNAIF AFDMGYGGGG YALSYPTVVT LLSNMEECIK
201: RYLGVYSDLL SFRCLADLGI DLTLEKGMHQ NDLHGDISGL LSAHPQSPLI SLHHFDVIDP IFPGMNRQQS VNHLMETAKT DQSRVLQQTI CYQRGYNWSV
301: SVSWGYSVHI YQSIYPRSHL KRPLETFRPW KDVRIPAYGF NTRRVTNDPC EMPRQFFFDS VVEDKNQSLV TTIYKMKMER RLPPCLLNGN HSSRNITQVR
401: VIATTMHKMV EGIECCDVQN VNSTEILEVK IRDCHIDEAL A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)