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AT5G12410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.941
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : THUMP domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
THUMP domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: THUMP (InterPro:IPR004114); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1818eggNOG:KOG3943EMBL:AL592312EMBL:AY127011EMBL:BT001143EMBL:CP002688EnsemblPlants:AT5G12410
EnsemblPlants:AT5G12410.1entrez:831116GeneID:831116GO:GO:0003723GO:GO:0005829Gramene:AT5G12410.1hmmpanther:PTHR13452
hmmpanther:PTHR13452:SF10HOGENOM:HOG000078762InterPro:IPR004114KEGG:ath:AT5G12410KO:K06963ncoils:CoilOMA:TEKSDHQ
Pfam:PF02926Pfscan:PS51165PhylomeDB:Q94CK1PROSITE:PS51165Proteomes:UP000006548RefSeq:NP_568274.1SMART:SM00981
SMR:Q94CK1STRING:3702.AT5G12410.1SUPFAM:SSF143437TAIR:AT5G12410UniGene:At.21767UniProt:Q94CK1
Coordinates (TAIR10) chr5:-:4021974..4023950
Molecular Weight (calculated) 41942.50 Da
IEP (calculated) 4.98
GRAVY (calculated) -0.79
Length 376 amino acids
Sequence (TAIR10)
(BLAST)
001: MASGDQSKKR KQHYRPQNRP VKKKGSYPLK PGVQGFFISC DGGREFQAAQ EAINVIDSFF EELIQGTDSK VNPGLFGNPI NKKVTFSYSE DEDEEEDESN
101: NGEEEENKGD GDKAVVSEGG NDLVNEKEIA SEGVNDQVNE KEIASEGSCE VKQLAENETV KEEEDKGNQK NGGDEPPRKK TCTEEANPLA KVNENAEKSI
201: DKLIEAELKE LGDKSKRRFM KLDPGCNGLV FIQMKKRDGD PSPKEIVQHA MTSAAATKKH MSRFILRLLP IEVSCYPSEE EISRAIKPLV EQYFPIETEN
301: PRKFAVLYGA RANTGLDRMK IINTIAKSIP APHKVDLSNP EMTIVVEIIK TVCLIGVVEK YKELAKYNLR QLTSTN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)