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AT5G12390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.913
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Encodes a protein with similarity to yeast FIS proteins. These membrane anchored proteins bind DRP proteins and function during organelle division. FIS1B is expressed ubiquitously and appears to be involved in peroxisome division.
Computational
Description (TAIR10)
FISSION 1B (FIS1B); FUNCTIONS IN: binding; INVOLVED IN: peroxisome fission; LOCATED IN: mitochondrion, peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide repeat 11 Fission 1 protein (InterPro:IPR016543), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57090.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:16392eggNOG:ENOG4111PPHeggNOG:KOG3364EMBL:AB195718EMBL:AK118241EMBL:AL592312EMBL:BT005496
EMBL:CP002688EnsemblPlants:AT5G12390EnsemblPlants:AT5G12390.1entrez:831114Gene3D:1.25.40.10GeneID:831114Genevisible:Q94CK3
GO:GO:0000266GO:GO:0005739GO:GO:0005741GO:GO:0005777GO:GO:0005778GO:GO:0016021GO:GO:0016559
Gramene:AT5G12390.1hmmpanther:PTHR13247hmmpanther:PTHR13247:SF3HOGENOM:HOG000165386InParanoid:Q94CK3IntAct:Q94CK3InterPro:IPR011990
InterPro:IPR013026InterPro:IPR016543InterPro:IPR019734InterPro:IPR028058InterPro:IPR028061KEGG:ath:AT5G12390KO:K17969
OMA:NDTSAMKPANTHER:PTHR13247PaxDb:Q94CK3Pfam:PF14852Pfam:PF14853Pfam:Q94CK3Pfscan:PS50005
Pfscan:PS50293PhylomeDB:Q94CK3PIRSF:PIRSF008835PRIDE:Q94CK3PRO:PR:Q94CK3PROSITE:PS50005PROSITE:PS50293
ProteinModelPortal:Q94CK3Proteomes:UP000006548RefSeq:NP_568272.1SMR:Q94CK3STRING:3702.AT5G12390.1SUPFAM:SSF48452TAIR:AT5G12390
tair10-symbols:FIS1BTMHMM:TMhelixUniGene:At.70179UniProt:Q94CK3
Coordinates (TAIR10) chr5:-:4010948..4011950
Molecular Weight (calculated) 17920.60 Da
IEP (calculated) 4.64
GRAVY (calculated) 0.10
Length 167 amino acids
Sequence (TAIR10)
(BLAST)
001: MDAAIGKVFD SVSDFFSGAA SASADEFPLC DSDIISGCEK ELAEAQDEGR KKECIMRLSW ALVHSKMPSD IQRGIAMLEA LVVNDTSAMK LREKLYLLAL
101: GYYRSGDFSR SRDCIERCLE VEPESGQAQA LKKAIEDRIV KDGVIGVGIA VTAVGVVAGI AAAILRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)