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AT5G12340.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXTKeggNOG:ENOG410YHQZEMBL:AL592312EMBL:CP002688EnsemblPlants:AT5G12340EnsemblPlants:AT5G12340.1entrez:831109
GeneID:831109Gramene:AT5G12340.1hmmpanther:PTHR33052hmmpanther:PTHR33052:SF4InterPro:IPR025322KEGG:ath:AT5G12340OMA:ATSCGEN
Pfam:PF14009PhylomeDB:Q94CK8Proteomes:UP000006548RefSeq:NP_568267.1STRING:3702.AT5G12340.1TAIR:AT5G12340UniGene:At.65507
UniProt:Q94CK8
Coordinates (TAIR10) chr5:-:3992948..3993610
Molecular Weight (calculated) 25107.30 Da
IEP (calculated) 8.28
GRAVY (calculated) -0.23
Length 220 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRSLINSCF PIIRRRQGIV TLVFFEHVST KTLCGFKKHV AGEIMFEFPD QIVCHADSFY IGRQIPALAM DDYLIPGQTY FVLPIERFQY KILTTSCLSI
101: FNSNLENVRS NTPPLNFTAP SSPPPFEYSQ GPNGKILIKV SPEFIISLIC KNRNIREEEA TSCGENSAIC NSPELKKQYD QLVGTREHMW SPNLQTISEH
201: KIRVSPLRFF GLNRKQDEVN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)