AT5G12290.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : dgd1 suppressor 1 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a mitochondrial outer membrane protein, involved in galactoglycerolipid biosynthesis. The dgd1 mutant phenotype is suppressed in the dgs1 mutant background. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DGD1 SUPPRESSOR 1 (DGS1); INVOLVED IN: galactolipid biosynthetic process, hydrogen peroxide biosynthetic process; LOCATED IN: mitochondrial outer membrane, mitochondrion, protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear control of ATP synthase 2 (InterPro:IPR013946); Has 223 Blast hits to 223 proteins in 116 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 125; Plants - 59; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:3974374..3978066 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68898.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.10 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||
| Length | 602 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSQPPVNES TPSTALSNFG ELVPFYSSYL WNRLASLLPT SKPIFLGKIS NLYRQTVSRK RSISFPLPLP SDFPSSSTIT SNVSADTARI HGVLEEIMAD 101: VLSNLHDIQK SLDFWRSRAE GSNARKAYFM IFERGPTAFV NESTKFVSKS LSEDSAMQHL CQSSSSHMTE RMRVLVELRS ALASFIAQLY VELDKRGEDL 201: VKIPEKALPS LLAVINGLFS NLEGSFSHLH AVRECDSSVD GSYPMPLVFD RLPEVNEEGS QWTDCELTDA INLVHKNLEK LNSYLSVMVG KHRKPRRMTL 301: YWVRYTCGAV GLSVFSIWLL RHSSLMGSSD IENWVHDAKE ATMSFFSDHV EQPLLSIRDE LFDTFRKRHK GVMETEEVQL TQDSLHRMLR NFCEQATREK 401: VPDNASDQEM LEVVMNRYEK ELVHPIHNLL SGELARGLLI QVQKLKLDIE TAMLELDQIL RANEINFAIL AALPAFFLSI VMLTVLRTWL KKDSKAQGRG 501: RIARIHRRLL VVEIEKRIMQ YQSYIEQGRD KDAETVFGLL IYSLERLYRV VEKPARATDE WDLVKQDLIE LGRPQQQTSY KLTVTQRLVT VYDCLLPTLK 601: RQ |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)