suba logo
AT5G12230.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MED19A; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19480.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:16375DIP:DIP-39929NeggNOG:ENOG410IXZDeggNOG:ENOG410YHQE
EMBL:AB007727EMBL:BT010725EMBL:BT011651EMBL:CP002688
EnsemblPlants:AT5G12230EnsemblPlants:AT5G12230.1entrez:831097GeneID:831097
Genevisible:Q9FMP0GO:GO:0006351GO:GO:0006355GO:GO:0016592
Gramene:AT5G12230.1hmmpanther:PTHR22536HOGENOM:HOG000070658InParanoid:Q9FMP0
IntAct:Q9FMP0iPTMnet:Q9FMP0KEGG:ath:AT5G12230OMA:HEGMEDS
PaxDb:Q9FMP0Pfam:Q9FMP0PhylomeDB:Q9FMP0PRIDE:Q9FMP0
PRO:PR:Q9FMP0Proteomes:UP000006548RefSeq:NP_196784.1STRING:3702.AT5G12230.1
TAIR:AT5G12230tair10-symbols:MED19AUniGene:At.32163UniGene:At.66693
UniProt:Q9FMP0
Coordinates (TAIR10) chr5:-:3953915..3955285
Molecular Weight (calculated) 25698.10 Da
IEP (calculated) 9.96
GRAVY (calculated) -1.57
Length 221 amino acids
Sequence (TAIR10)
(BLAST)
001: MEPERLKFGG PRELCGAADL ISQFKLVQHH EFFCKKSLPV SLSDSHYLHN VVGDTEIRKG EGMQLDQLIE SISQSRETNI RIQPFDIDEL QESFQLNDMT
101: PVELPPAEKG APTIPSKSKS ESKDRDRKHK KHKDRDKDKD REHKKHKHKH KDRSKDKDKD KDRDRKKDKN GHHDSGDHSK KHHDKKRKHD GDEDLNDVQR
201: HKKNKHKSSK LDEVGAIRVA G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)