suba logo
AT5G12200.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:19413687 (2009): endoplasmic reticulum
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22430844 (2012): Golgi
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pyrimidine 2
Curator
Summary (TAIR10)
Encodes a protein with dihydropyrimidine amidohydrolase activity. It localizes to the secretory system and plays a role in uracil metabolism.
Computational
Description (TAIR10)
pyrimidine 2 (PYD2); CONTAINS InterPro DOMAIN/s: D-hydantoinase (InterPro:IPR011778), Amidohydrolase 1 (InterPro:IPR006680), Metal-dependent hydrolase, composite domain (InterPro:IPR011059); BEST Arabidopsis thaliana protein match is: allantoinase (TAIR:AT4G04955.1); Has 11476 Blast hits to 11454 proteins in 2253 species: Archae - 299; Bacteria - 6727; Metazoa - 670; Fungi - 189; Plants - 91; Viruses - 0; Other Eukaryotes - 3500 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT5G12200-MONOMERBRENDA:3.5.2.2EC:3.5.2.2eggNOG:COG0044eggNOG:KOG2584EMBL:AB007727EMBL:AF465755
EMBL:CP002688EnsemblPlants:AT5G12200EnsemblPlants:AT5G12200.1entrez:831093Gene3D:2.30.40.10GeneID:831093Genevisible:Q9FMP3
GO:GO:0004157GO:GO:0005783GO:GO:0005794GO:GO:0006212GO:GO:0012505GO:GO:0019483GO:GO:0043562
GO:GO:0046872Gramene:AT5G12200.1gramene_pathway:3.5.2.2gramene_pathway:PWY-3982gramene_plant_reactome:1119297gramene_plant_reactome:6876518hmmpanther:PTHR11647
hmmpanther:PTHR11647:SF1HOGENOM:HOG000219145IntAct:Q9FMP3InterPro:IPR006680InterPro:IPR011059InterPro:IPR011778InterPro:IPR032466
KEGG:ath:AT5G12200KO:K01464MEROPS:M38.A01OMA:GFHLMISPaxDb:Q9FMP3Pfam:PF01979Pfam:Q9FMP3
PhylomeDB:Q9FMP3PRIDE:Q9FMP3PRO:PR:Q9FMP3ProteinModelPortal:Q9FMP3Proteomes:UP000006548Reactome:R-ATH-73621RefSeq:NP_568258.2
SMR:Q9FMP3STRING:3702.AT5G12200.1SUPFAM:SSF51338SUPFAM:SSF51556TAIR:AT5G12200tair10-symbols:PYD2TIGRfam:TIGR02033
TIGRFAMs:TIGR02033UniGene:At.8822UniPathway:UPA00131UniProt:Q9FMP3
Coordinates (TAIR10) chr5:-:3941700..3944727
Molecular Weight (calculated) 57994.60 Da
IEP (calculated) 5.74
GRAVY (calculated) -0.06
Length 531 amino acids
Sequence (TAIR10)
(BLAST)
001: MALDAFFFIV SLFLLFPSPS ASESTTQFCS AGRENGVGSC GVSSTRILIK GGTVVNAHHQ ELADVYVENG IIVAVQPNIK VGDEVTVLDA TGKFVMPGGI
101: DPHTHLAMEF MGTETIDDFF SGQAAALAGG TTMHIDFVIP VNGNLVAGFE AYENKSRESC MDYGFHMAIT KWDEGVSRDM EMLVKEKGIN SFKFFLAYKG
201: SLMVTDDLLL EGLKRCKSLG ALAMVHAENG DAVFEGQKRM IELGITGPEG HALSRPPVLE GEATARAIRL ARFINTPLYV VHVMSVDAMD EIAKARKSGQ
301: KVIGEPVVSG LILDDHWLWD PDFTIASKYV MSPPIRPVGH GKALQDALST GILQLVGTDH CTFNSTQKAL GLDDFRRIPN GVNGLEERMH LIWDTMVESG
401: QLSATDYVRI TSTECARIFN IYPRKGAILA GSDADIIILN PNSSYEISSK SHHSRSDTNV YEGRRGKGKV EVTIAGGRIV WENEELKVVP RSGKYIEMPP
501: FSYLFDGIEK SDANYLSSLR APVKRVRTEA T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)