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AT5G12130.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18429937 (2008): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : integral membrane TerC family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PIGMENT DEFECTIVE 149 (PDE149); CONTAINS InterPro DOMAIN/s: Integral membrane protein TerC (InterPro:IPR005496), Integral membrane protein TerC, riboswitch-linked (InterPro:IPR022369); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0861eggNOG:ENOG410IGKZEMBL:AB007727EMBL:AY072336EMBL:AY086401EMBL:AY114608EMBL:CP002688
EnsemblPlants:AT5G12130EnsemblPlants:AT5G12130.1entrez:831086GeneID:831086Genevisible:F4JZG9GO:GO:0009534GO:GO:0009535
GO:GO:0010027GO:GO:0016021GO:GO:0090351Gramene:AT5G12130.1hmmpanther:PTHR30238hmmpanther:PTHR30238:SF0InParanoid:F4JZG9
InterPro:IPR005496InterPro:IPR022369KEGG:ath:AT5G12130OMA:LILHWAHPANTHER:PTHR30238:SF0PaxDb:F4JZG9Pfam:PF03741
PRIDE:F4JZG9ProteinModelPortal:F4JZG9Proteomes:UP000006548RefSeq:NP_568257.1STRING:3702.AT5G12130.1TAIR:AT5G12130tair10-symbols:ATTERC
tair10-symbols:PDE149TIGRfam:TIGR03718TIGRFAMs:TIGR03718TMHMM:TMhelixUniGene:At.27965UniGene:At.67911UniProt:F4JZG9
Coordinates (TAIR10) chr5:+:3919613..3922154
Molecular Weight (calculated) 41902.70 Da
IEP (calculated) 5.42
GRAVY (calculated) 0.34
Length 384 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLASVIHHG ILPPAKSDRI FLTIPVFPPD FRARGWTKSP FSLLINPSLA SAANRRLSHL PPIACSRGID QEDEEKESRE LLPHKNDENA TTSRSSSSVD
101: SGGLKDYQQE ETYKTSFKTV ALCVGTAVAF GIGIGLKEGV GKASEFFAGY ILEQSLSVDN LFVFVLVFKY FKVPLMYQNK VLTYGIAGAI VFRFTLILLG
201: TATLQKFEAV NLLLAAVLLY SSFKLFASEE DDTDLSDNFI VKTCQRFIPV TSSYDGNRFF TKHDGILKAT PLLLTVAVIE LSDIAFAVDS IPAVFGVTRD
301: PFIVLTSNLF AILGLRSLYT LISEGMDELE YLQPSIAVVL GFIGVKMILD FFGFHISTEA SLGVVALSLS TGVLLSLTNK SSDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)