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AT5G12110.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.982
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: eukaryotic translation elongation factor 1 complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange (InterPro:IPR014038), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Translation elongation factor EF1B, beta/delta chains, conserved site (InterPro:IPR001326); BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1B/ribosomal protein S6 family protein (TAIR:AT5G19510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2092eggNOG:KOG1668EMBL:BT024774EnsemblPlants:AT5G12110EnsemblPlants:AT5G12110.1entrez:831084ExpressionAtlas:Q29PY2
Gene3D:1.20.1050.10Gene3D:3.30.70.60GeneID:831084GO:GO:0003746GO:GO:0005853Gramene:AT5G12110.1hmmpanther:PTHR11595
hmmpanther:PTHR11595:SF24InParanoid:Q84WM9InterPro:IPR001326InterPro:IPR010987InterPro:IPR014038InterPro:IPR014717KEGG:ath:AT5G12110
KO:K03232ncoils:CoilOMA:ASKWYDSPaxDb:Q29PY2Pfam:PF00736Pfam:Q84WM9PhylomeDB:Q29PY2
PRIDE:Q29PY2PROSITE:PS00825ProteinModelPortal:Q29PY2RefSeq:NP_196772.1scanprosite:PS00825SMART:SM00888SMR:Q29PY2
STRING:3702.AT5G12110.1SUPFAM:SSF47616SUPFAM:SSF54984TAIR:AT5G12110UniGene:At.699UniProt:Q29PY2UniProt:Q84WM9
Coordinates (TAIR10) chr5:+:3914483..3915732
Molecular Weight (calculated) 24789.80 Da
IEP (calculated) 4.29
GRAVY (calculated) -0.54
Length 228 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVTFSDLHT ERGLKTLEEH LAGKTYISGD QLSVDDVKVY AAVLENPGDG FPNASKWYDS VASHLAKSFP GKADGVRVGG GVAPPSEAHP HTEEPAADGD
101: GDDDDDIDLF ADETEDEKKA AEEREAAKKD TKKTKESGKS SVLLEVKPWD DETDMKKLEE AVRSVQMPGL TWGASKLVPV GYGIKKLTIM MTIVDDLVSV
201: DNLIEDHLTS EPNNEYIQSV DIVAFNKI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)