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AT5G12100.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pentatricopeptide (PPR) repeat-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G65560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB007727EMBL:AK228623EMBL:BT005769EMBL:BT006094EMBL:CP002688
EnsemblPlants:AT5G12100EnsemblPlants:AT5G12100.1entrez:831083Gene3D:1.25.40.10GeneID:831083Genevisible:Q9FMQ1GO:GO:0005739
GO:GO:0008270Gramene:AT5G12100.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF416HOGENOM:HOG000242783InParanoid:Q9FMQ1InterPro:IPR002885
InterPro:IPR011990KEGG:ath:AT5G12100OMA:QNRIETAPaxDb:Q9FMQ1Pfam:PF01535Pfam:PF12854Pfam:PF13041
Pfam:Q9FMQ1Pfscan:PS51375PhylomeDB:Q9FMQ1PRIDE:Q9FMQ1PRO:PR:Q9FMQ1PROSITE:PS51375ProteinModelPortal:Q9FMQ1
Proteomes:UP000006548RefSeq:NP_196771.1SMR:Q9FMQ1STRING:3702.AT5G12100.1SUPFAM:SSF81901TAIR:AT5G12100TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.32172UniProt:Q9FMQ1
Coordinates (TAIR10) chr5:+:3911388..3913838
Molecular Weight (calculated) 91923.80 Da
IEP (calculated) 6.15
GRAVY (calculated) -0.20
Length 816 amino acids
Sequence (TAIR10)
(BLAST)
001: MVTRLRLVSR SSRYATVKFT DSVSACSCRR LFSASTDPEP ESQPEQAPPT NPVTGDEKLR NLRVLLQQNR IETARGVLSS LLRSDSTPFA SPKELFSAFS
101: LSSPSLKHDF SYLLLSVLLN ESKMISEAAD LFFALRNEGI YPSSDSLTLL LDHLVKTKQF RVTINVFLNI LESDFRPSKF MYGKAIQAAV KLSDVGKGLE
201: LFNRMKHDRI YPSVFIYNVL IDGLCKGKRM NDAEQLFDEM LARRLLPSLI TYNTLIDGYC KAGNPEKSFK VRERMKADHI EPSLITFNTL LKGLFKAGMV
301: EDAENVLKEM KDLGFVPDAF TFSILFDGYS SNEKAEAALG VYETAVDSGV KMNAYTCSIL LNALCKEGKI EKAEEILGRE MAKGLVPNEV IYNTMIDGYC
401: RKGDLVGARM KIEAMEKQGM KPDHLAYNCL IRRFCELGEM ENAEKEVNKM KLKGVSPSVE TYNILIGGYG RKYEFDKCFD ILKEMEDNGT MPNVVSYGTL
501: INCLCKGSKL LEAQIVKRDM EDRGVSPKVR IYNMLIDGCC SKGKIEDAFR FSKEMLKKGI ELNLVTYNTL IDGLSMTGKL SEAEDLLLEI SRKGLKPDVF
601: TYNSLISGYG FAGNVQRCIA LYEEMKRSGI KPTLKTYHLL ISLCTKEGIE LTERLFGEMS LKPDLLVYNG VLHCYAVHGD MEKAFNLQKQ MIEKSIGLDK
701: TTYNSLILGQ LKVGKLCEVR SLIDEMNARE MEPEADTYNI IVKGHCEVKD YMSAYVWYRE MQEKGFLLDV CIGNELVSGL KEEWRSKEAE IVISEMNGRM
801: LGDVTVDEDL SATEKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)