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AT5G11990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : proline-rich family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
proline-rich family protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JSCPeggNOG:ENOG41112Y1EMBL:AL163812EMBL:CP002688
EnsemblPlants:AT5G11990EnsemblPlants:AT5G11990.1entrez:831072GeneID:831072
GO:GO:0016021GO:GO:0031225Gramene:AT5G11990.1HOGENOM:HOG000153176
KEGG:ath:AT5G11990OMA:CISECNTPIR:T48558Proteomes:UP000006548
RefSeq:NP_196760.1STRING:3702.AT5G11990.1TAIR:AT5G11990TMHMM:TMhelix
UniGene:At.65023UniProt:Q9LYH4
Coordinates (TAIR10) chr5:-:3872651..3873196
Molecular Weight (calculated) 18991.00 Da
IEP (calculated) 7.95
GRAVY (calculated) 0.06
Length 181 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLIVIIIAL VMVMVVASSP SDQTNVLTPL CISECSTCPT ICSPPPSKPS PSMSPPPSPS LPLSSSPPPP PPHKHSPPPL SQSLSPPPLI TVIHPPPPRF
101: YYFESTPPPP PLSPDGKGSP PSVPSSPPSP KGQSQGQQQP PYPFPYFYFY TASNATLLFS SSFLIALVVS SLSIFLNGSL V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)