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AT5G11980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : conserved oligomeric Golgi complex component-related / COG complex component-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
conserved oligomeric Golgi complex component-related / COG complex component-related; CONTAINS InterPro DOMAIN/s: Conserved oligomeric Golgi complex, subunit 8 (InterPro:IPR016632), Dor1-like protein (InterPro:IPR007255); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNZ7eggNOG:KOG2069EMBL:BT002913EMBL:BT004349EMBL:CP002688EnsemblPlants:AT5G11980EnsemblPlants:AT5G11980.1
entrez:831071GeneID:831071GO:GO:0009506GO:GO:0017119Gramene:AT5G11980.1hmmpanther:PTHR21311hmmpanther:PTHR21311:SF0
HOGENOM:HOG000244106IntAct:Q84K25InterPro:IPR007255InterPro:IPR016159InterPro:IPR016632KEGG:ath:AT5G11980OMA:MGEHTVN
PANTHER:PTHR21311Pfam:PF04124PhylomeDB:Q84K25PIRSF:PIRSF015415Proteomes:UP000006548Reactome:R-ATH-6807878RefSeq:NP_568256.1
STRING:3702.AT5G11980.1SUPFAM:SSF74788TAIR:AT5G11980UniGene:At.32189UniProt:Q84K25
Coordinates (TAIR10) chr5:-:3868809..3872146
Molecular Weight (calculated) 63055.80 Da
IEP (calculated) 4.82
GRAVY (calculated) -0.12
Length 569 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMEVGEMSQ PEATASLLSL ASATQQPYVS ELLSFTLDRL HKEPELLRVD AERIQRQMQE VAVGNYRAFI TAADALLAIR QEVSSIDKHL ESLIGEVPKL
101: TSGCTEFIDS AENILEKRKM NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATLHPKL PVIQALAAEV RQTTQSLLSQ LLQKLRSNIQ
201: LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFSDDTSGSE ENYDGGLLFS WAMHQITSHL
301: KTLKIMLPKI TEGGSLSNIL DQCMYCAMGL GGVGLDFRGL LPPLFEEAVL NLFSKNMSTA VENFQLVLDS HRWVPLPSVG FPSSGINEDS KDDVTPPSYL
401: MEHPPLAVFI NGVSSALNEL RPCAPLSLKN VVAHELIKGL QAVSDSLLRY NTTRMLRLSE SNLFLSLCRA FVEVVFPHCA TCFGRCYPGG ATIVMDAKSA
501: YEGLGRILAA SSSQEPSNKS PKVISTDTKD ASENGVASQP EEKQAENPNA KEEDNSPIPL QTPEITPES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)