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AT5G11810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
DNASU:831054eggNOG:ENOG410IK2EeggNOG:ENOG4111MHJEMBL:AK118680
EMBL:AL163814EMBL:BT025870EMBL:CP002688EnsemblPlants:AT5G11810
EnsemblPlants:AT5G11810.1entrez:831054GeneID:831054GO:GO:0005829
Gramene:AT5G11810.1hmmpanther:PTHR35506hmmpanther:PTHR35506:SF1HOGENOM:HOG000238767
KEGG:ath:AT5G11810OMA:AMENTSSPhylomeDB:Q9LYF0PIR:T48540
Proteomes:UP000006548RefSeq:NP_196742.1TAIR:AT5G11810UniGene:At.32209
UniProt:Q9LYF0
Coordinates (TAIR10) chr5:+:3808739..3810440
Molecular Weight (calculated) 33397.00 Da
IEP (calculated) 5.63
GRAVY (calculated) -0.04
Length 306 amino acids
Sequence (TAIR10)
(BLAST)
001: MADKSSRSLI LYGDGLARFV DPSNTNIHSL ASVATCGFLS LPNAPPETEN ERIVREFSHL LDASEAYSIA SGLKPKGNGN DISTLAERFM GLKAALVTDS
101: STLTSFGKLI GLDVLQLSEI CQESDSFPSD ATSSKLLKLL GFEGGKCLDV NLYDLVFVHF GVDEYNNGNN MGILDSLIGS IMGMAQPGSE ILSRLHLSVV
201: LSYGSVTDKD VSVFPIKTPQ EDINPAFIGL VPRQSYTMRG EKTRDDVRHY CPMLVAQWQH GVTRKDLVDT LSFEALKKLC GNLVIPADRF IHEVAFKLWK
301: APKYGA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)