AT5G11700.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G32920.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:3762961..3771123 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 152474.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.52 | ||||||||||||||||||||||||
| GRAVY (calculated) | 0.02 | ||||||||||||||||||||||||
| Length | 1419 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MARFQFCCVF VLVALAVLAV NPSSSYRFTI VEPKSGSDSD LDSDSESLLF HQDYSPPAPP PPPPHGPSVS CSEDLGGVGF LDTTCKIVAD LNLTHDVYIA 0101: GKGNFIILPG VRFHCPIPGC SIAINVSGNF SLGAESTIVA GTLELTAGNA SFANGSAVNT TGLAGSPPPQ TSGTPQGIDG AGGGHGGRGA CCLTDTKKLP 0201: EDVWGGDAYS WSTLQKPWSY GSKGGSTSRE IDYGGGGGGK VKMDILQLLD VNGSLLANGG YGGAKGGGGS GGSIYIKAYK MTGIGKISAC GGSGYGGGGG 0301: GRVSVDIFSR HDDPKIFVHG GYSIGCPDNS GAAGTLYDAV PRSLFVSNYN QTTDTYTLLL EFPFQPLWTN VYIQDKARAT CPLLWSRVQV QGQISLLCGG 0401: VLSFGLAHYG TSVFELLAEE LLMSDSTIKV YGALRMTVKM FLMWNSELHL DGGGGDTTVS TSMLEASNLF VLRGSSVIRS NANLGVHGQG FLNLTGPGDS 0501: IEAQRLVLSL FYRIYVGPGS ILRAPLLNAS RDAVTPKLYC ERQDCPYELL NPPEDCNVNA SLSFTLQICR VEDILVEGFI KGSVVHFHRA KTVTLEPSGE 0601: ISASGMGCRG GVGEGKLLGN GFGSGGGHGG KGGRVCYNNS CVEGGITYGN ANLPCELGSG SGDFSPGYSS AGGGIVVIGS MEQPLSGLSL EGSIRVDGES 0701: VKRLSRDENG SIVAPGGGSG GTVLLFLRYL ILGESSLLSS GGGSGSPGGG GGGGGGRIHF HWSNIPTGDI YQPIASVKGI IHARGGAAAD DGFYGKNGTI 0801: TGTACPKGLH GIFCKECPSG TFKNVTGSDP SLCRPCPVDE LPTRAVYVTV RGGVSETPCP YRCISERYHM PHCYTALEEL IYTFGGPWLF GLLLMGLLIL 0901: LALVLSVARM KFVGVDDLPG PAPTQHGSQI DHSFPFLESL NEVLETNRAE QSQSHVHRMY FMGPNTFSEP WHLSHIPPEE IKEIVYEAAF NTFVDEINSI 1001: AAYQWWEGAI YSILSVVAYP LAWSWQQWRR KMKLQKLREF VRSEYDHSCL RSCRSRALYE GLKVAATSDL MLAYLDFFLG GDEKRTDLPP RLHQRFPMPI 1101: LFGGDGSYMA PFSLQNDNIL TSLMSQLGSP TTWYRLVAGV NAQLRLVRRG RLRSTFHSVL RWLETHANPA LETHGIRVDL AWFQTTACGY CQYGLLIHTV 1201: EDCEPTSPQC VSETTWTEIQ PRKNYGGIID LDSLPSLKEK RDMFFLLSFL VHNTKPVGHQ DMVGLVISML LLGDFSLVLL TLLQLYSISL LDVLLALFIL 1301: PLGLLLPFPA GINALFSHGP RRSAGLARVY ALWNFMSLVN VFVAFLCGYV HYHSESSASK KIPFQPWNIN MGESEWWIFP AGLVVCKIMQ SQLINRHVAN 1401: LEIQDRSLYS KDYELFWQS |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)