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AT5G11640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.884
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Thioredoxin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Thioredoxin superfamily protein; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XVTAeggNOG:KOG0914EMBL:AK226426EMBL:AL163814
EMBL:BT030050EMBL:CP002688EnsemblPlants:AT5G11640EnsemblPlants:AT5G11640.1
entrez:831036Gene3D:3.40.30.10GeneID:831036GO:GO:0016021
Gramene:AT5G11640.1hmmpanther:PTHR15853HOGENOM:HOG000237623InterPro:IPR012336
KEGG:ath:AT5G11640OMA:PTYILFEPhylomeDB:Q9LYG6PIR:T48523
Proteomes:UP000006548RefSeq:NP_196725.1SMR:Q9LYG6SUPFAM:SSF52833
TAIR:AT5G11640TMHMM:TMhelixUniGene:At.32230UniGene:At.49008
UniProt:Q9LYG6
Coordinates (TAIR10) chr5:+:3742008..3743703
Molecular Weight (calculated) 28804.20 Da
IEP (calculated) 7.38
GRAVY (calculated) 0.31
Length 253 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKKREGVIE GMSRIVSDPY YFLHFMAFFS YLPIRSSAAP YTSHRLFDRE IQAFLAFLMF SAIKMVREET WEAFVADSLL YAKIFLIAVS LIMDYRVAVW
101: FSIIFSVIYL LAQQPAFSKL GTAKKLTPMQ LEDLLSDGNT TKYWLIEFFA CSSSKCVRSS RCFPELSITY SNNLLSFGTV DLGLFPNTAA KFGISLAGGM
201: SQLPTYILFE KGVEVSRFPD FYVDAAPSLP ITKKLLCQHF ELDRLLLDYI NGT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)