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AT5G11620.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.973
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, SWIM-type (InterPro:IPR007527), Zinc finger, RING-type (InterPro:IPR001841); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IX3BeggNOG:ENOG4111THBEMBL:AK118062EMBL:AL163814EMBL:BT005601EMBL:CP002688EMBL:DQ059086
EnsemblPlants:AT5G11620EnsemblPlants:AT5G11620.1entrez:831034Gene3D:3.30.40.10GeneID:831034GO:GO:0008270GO:GO:0016301
Gramene:AT5G11620.1hmmpanther:PTHR21540hmmpanther:PTHR21540:SF1HOGENOM:HOG000241905IntAct:Q9LYG8InterPro:IPR007527InterPro:IPR013083
KEGG:ath:AT5G11620OMA:ATCVVCRPfam:PF04434Pfscan:PS50966PhylomeDB:Q9LYG8PIR:T48521PROSITE:PS50966
Proteomes:UP000006548RefSeq:NP_196723.1SUPFAM:SSF57850TAIR:AT5G11620UniGene:At.32234UniProt:Q9LYG8
Coordinates (TAIR10) chr5:-:3739076..3740127
Molecular Weight (calculated) 30609.80 Da
IEP (calculated) 8.68
GRAVY (calculated) -0.42
Length 273 amino acids
Sequence (TAIR10)
(BLAST)
001: MESVGSNQIS PYVSNRDQRH FLAQPVADRI LRALRHRIRL LHRPNAGTFH VLGATCNVYT VTLMATPTCT CPDRKKPCKH ILFVLIRVLG IPLDDKCLRQ
101: RRLRTCLLFH LFSAPTRPDC LASFRLQQRF LQLFPATTSQ PGYTTNSSSS TSKMENEVDE EPATCPICLD DIIAIENVDG GNGGGKEKET AVVKCRVCKN
201: KVHDECMLAW RKSRGRRPAI CVVCRARWPA NRSSKNPNVG DNNENCHGNC YLNLAPYVDE EVEDGVGTSQ RPC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)