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AT5G11590.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.
Computational
Description (TAIR10)
TINY2 (TINY2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: shoot apex, embryo, hypocotyl, leaf; EXPRESSED DURING: LP.10 ten leaves visible, D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G25810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYGFeggNOG:ENOG410YM26EMBL:AL163815EMBL:AY560851EMBL:AY940160EMBL:CP002688EnsemblPlants:AT5G11590
EnsemblPlants:AT5G11590.1entrez:831031Gene3D:3.30.730.10GeneID:831031Genevisible:Q9LYD3GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009873GO:GO:0043565GO:GO:0045893Gramene:AT5G11590.1hmmpanther:PTHR31985hmmpanther:PTHR31985:SF23
HOGENOM:HOG000237624InParanoid:Q9LYD3InterPro:IPR001471InterPro:IPR016177KEGG:ath:AT5G11590KO:K09286OMA:WGQSSED
PaxDb:Q9LYD3Pfam:PF00847Pfam:Q9LYD3Pfscan:PS51032PhylomeDB:Q9LYD3PIR:T48518PRINTS:PR00367
PRO:PR:Q9LYD3PROSITE:PS51032ProteinModelPortal:Q9LYD3Proteomes:UP000006548RefSeq:NP_196720.1SMART:SM00380SMR:Q9LYD3
STRING:3702.AT5G11590.1SUPFAM:SSF54171TAIR:AT5G11590tair10-symbols:TINY2UniGene:At.50619UniProt:Q9LYD3
Coordinates (TAIR10) chr5:-:3727789..3728499
Molecular Weight (calculated) 26045.20 Da
IEP (calculated) 5.16
GRAVY (calculated) -0.53
Length 236 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEEYYSLRS ERVTQLLVPN SESDSVSDKS KAEQSEKKTK RGRDSGKHPV YRGVRMRNWG KWVSEIREPR KKSRIWLGTF PTPEMAARAH DVAALSIKGT
101: AAILNFPELA DSFPRPVSLS PRDIQTAALK AAHMEPTTSF SSSTSSSSSL SSTSSLESLV LVMDLSRTES EELGEIVELP SLGASYDVDS ANLGNEFVFY
201: DSVDYCLYPP PWGQSSEDNY GHGISPNFGH GLSWDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)