AT5G11560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : catalytics | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
catalytics; FUNCTIONS IN: catalytic activity; LOCATED IN: endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1620 (InterPro:IPR011678), Quinonprotein alcohol dehydrogenase-like (InterPro:IPR011047); Has 475 Blast hits to 428 proteins in 206 species: Archae - 4; Bacteria - 52; Metazoa - 151; Fungi - 150; Plants - 40; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:3709734..3713994 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 108874.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.80 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 982 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAIRVFLTLL LFLSSAILSF SLYEDQAGLT DWHQRYIGKV KHAVFHTQKT GRKRVIVSTE ENVVASLDLR HGEIFWRHVL GTKDAIDGVG IALGKYVITL 101: SSEGSTLRAW NLPDGQMVWE TSLHTAQHSK SLLSVPINLK VDKDYPITVF GGGYLHAVSA IDGEVLWKKD FTAEGFEVQR VLQAPGSSII YVLGFLHSSE 201: AVVYQIDSKS GEVVAQKSTV FPGGFSGEIS SVSSDKVVVL DSTRSILVTI GFIDGDISFQ KTPISDLVED SGTAEILSPL LSNMLAVKVN KRTIFVNVGD 301: KGKLEVVDSL SDETAMSDSL PVADDQEAFA SVHHEGSRIH LMVKLVNDLN NVLLRETIQM DQNRGRVHKV FMNNYIRTDR SNGFRALIVM EDHSLLLLQQ 401: GAIVWSREEG LASVTDVTTA ELPLEKDGVS VAKVEHTLFE WLKGHVLKLK GSLLLASPED VVAIQDLRVK SSGKNKLTRD HNGFRKLILA LTRAGKLFAL 501: HTGDGRIVWS MLLNSPSQSQ SCERPNGVSL YQWQVPHHHA MDENPSVLVV GKCGSDSSAP GVLSFVDVYT GKEISSSDIG HSVVQVMPLP ITDSKEQRLH 601: LIADTVGHVH LYPKTSEALS IFQREFQNVY WYTVEADDGI IRGHVMKGSC SGETADEYCF TTRELWTVVF PSESEKIIST LTRKPNEVVH TQAKVNTDQD 701: LLYKYVSRNL LFVATVSPKG AGEIGSVTPE ESSLVVYLID TITGRILHRL SHQGCQGPVH AVFSENWVVY HYFNLRAHKY EVTVVEIYDQ SRAENKNVWK 801: LILGKHNLTA PITSYSRPEV FTKSQSYFFA QSVKTIAVTS TAKGITSKQL LIGTIGDQIL ALDKRFVDPR RTLNPSQAEK EEGIIPLTDT LPIIPQAYVT 901: HSHKVEGLRG IVTAPSKLES TTHVFAYGVD LFYTRLAPSK TYDSLTDDFS YALLLITIVA LVAAIYITWV LSEKKELSEK WR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)