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AT5G11550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.996
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 26 (TAIR:AT1G49780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IW1GeggNOG:ENOG410YHH8EMBL:AL163815EMBL:BT002981EMBL:BT004426EMBL:CP002688EnsemblPlants:AT5G11550
EnsemblPlants:AT5G11550.1entrez:831027Gene3D:1.25.10.10GeneID:831027Gramene:AT5G11550.1hmmpanther:PTHR22849hmmpanther:PTHR22849:SF35
HOGENOM:HOG000241582IntAct:Q9LYD7InterPro:IPR011989InterPro:IPR016024KEGG:ath:AT5G11550OMA:EVRAHAMPhylomeDB:Q9LYD7
PIR:T48514Proteomes:UP000006548RefSeq:NP_196716.1STRING:3702.AT5G11550.1SUPFAM:SSF48371TAIR:AT5G11550UniGene:At.32242
UniProt:Q9LYD7
Coordinates (TAIR10) chr5:-:3708203..3709147
Molecular Weight (calculated) 33307.10 Da
IEP (calculated) 8.50
GRAVY (calculated) -0.18
Length 314 amino acids
Sequence (TAIR10)
(BLAST)
001: MMKANQKPKP HAPPRPLFSC GFFRRCTQSV LSPTSPHQQQ PRRKATTTSS SSSSSSTSTS QSFTQWRFPH HLDQTPSTAP PPPHPPPPPP PLPVTTTLQE
101: TFQIAELHLT SVSESDKLLA LQLLERVVVP DPPSDPTCPP GLMRGLVSCL RSNNKIVTAK YVTKILLALC LAEGNRHVAV EAGAARAVVE TAAGLEISAV
201: ERALAALELM CTTAEGAAEV RAHAMTVPAM VAVMARLAGR GREYAISILS VVYGKGGEGG DSGEEIAVAP AEEVARAVAL ALEGECTARG KRKGAQLLKT
301: LEEYGRLDLS QNGT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)