suba logo
AT5G11520.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
peroxisome 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24130194 (2013): peroxisome
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23750852 (2013): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22318864 (2012): plasma membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21311031 (2011): mitochondrion
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:19329564 (2009): peroxisome
  • PMID:18931141 (2008): peroxisome
  • PMID:17951448 (2007): peroxisome
FP Images

Arabidopsis cell culture (peroxisomal marker)

At5g-GFP-11520
(full-length)
RFP-peroxisomal markeroverlay

Images by John Bussel
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : aspartate aminotransferase 3
Curator
Summary (TAIR10)
Encodes the chloroplastic isozyme of aspartate aminotransferase. Involved in aspartate biosynthesis and nitrogen metabolism. mRNA is expressed in senescing leaves.
Computational
Description (TAIR10)
aspartate aminotransferase 3 (ASP3); FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity; INVOLVED IN: leaf senescence, nitrogen compound metabolic process; LOCATED IN: peroxisome, plastid, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Aspartate/other aminotransferase (InterPro:IPR000796), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aspartate aminotransferase 2 (TAIR:AT5G19550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:16302EC:2.6.1.1eggNOG:COG1448eggNOG:KOG1411
EMBL:AB047807EMBL:AL163815EMBL:AY050765EMBL:AY079310
EMBL:CP002688EMBL:U15034EnsemblPlants:AT5G11520EnsemblPlants:AT5G11520.1
entrez:831024Gene3D:3.40.640.10GeneID:831024Genevisible:P46644
GO:GO:0004069GO:GO:0005777GO:GO:0006103GO:GO:0006531
GO:GO:0006536GO:GO:0009058GO:GO:0009507GO:GO:0009536
GO:GO:0010150GO:GO:0016020GO:GO:0030170GO:GO:0042802
GO:GO:0080130Gramene:AT5G11520.1gramene_pathway:2.6.1.1gramene_pathway:ASPARTATESYN-PWY
hmmpanther:PTHR11879hmmpanther:PTHR11879:SF16HOGENOM:HOG000185898InParanoid:P46644
IntAct:P46644InterPro:IPR000796InterPro:IPR004838InterPro:IPR004839
InterPro:IPR015421InterPro:IPR015424iPTMnet:P46644KEGG:00220+2.6.1.1
KEGG:00250+2.6.1.1KEGG:00270+2.6.1.1KEGG:00330+2.6.1.1KEGG:00350+2.6.1.1
KEGG:00360+2.6.1.1KEGG:00400+2.6.1.1KEGG:00401+2.6.1.1KEGG:00710+2.6.1.1
KEGG:00950+2.6.1.1KEGG:00960+2.6.1.1KEGG:ath:AT5G11520KO:K14454
OMA:SFMTKEYPANTHER:PTHR11879PaxDb:P46644Pfam:P46644
Pfam:PF00155PhylomeDB:P46644PIR:T48511PRIDE:P46644
PRINTS:PR00799PRO:PR:P46644PROSITE:PS00105ProteinModelPortal:P46644
Proteomes:UP000006548Reactome:R-ATH-70263Reactome:R-ATH-70614RefSeq:NP_196713.1
scanprosite:PS00105SMR:P46644STRING:3702.AT5G11520.1SUPFAM:SSF53383
TAIR:AT5G11520tair10-symbols:ASP3tair10-symbols:YLS4UniGene:At.21687
UniProt:P46644
Coordinates (TAIR10) chr5:-:3685257..3687721
Molecular Weight (calculated) 48957.20 Da
IEP (calculated) 9.71
GRAVY (calculated) -0.10
Length 449 amino acids
Sequence (TAIR10)
(BLAST)
001: MKTTHFSSSS SSDRRIGALL RHLNSGSDSD NLSSLYASPT SGGTGGSVFS HLVQAPEDPI LGVTVAYNKD PSPVKLNLGV GAYRTEEGKP LVLNVVRKAE
101: QQLINDRTRI KEYLPIVGLV EFNKLSAKLI LGADSPAIRE NRITTVECLS GTGSLRVGGE FLAKHYHQKT IYITQPTWGN HPKIFTLAGL TVKTYRYYDP
201: ATRGLNFQGL LEDLGAAAPG SIVLLHACAH NPTGVDPTIQ QWEQIRKLMR SKGLMPFFDS AYQGFASGSL DTDAKPIRMF VADGGECLVA QSYAKNMGLY
301: GERVGALSIV CKSADVAGRV ESQLKLVIRP MYSSPPIHGA SIVAVILRDK NLFNEWTLEL KAMADRIISM RKQLFEALRT RGTPGDWSHI IKQIGMFTFT
401: GLNPAQVSFM TKEYHIYMTS DGRISMAGLS SKTVPHLADA IHAVVTKAV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)