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AT5G11490.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : adaptin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
adaptin family protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain (InterPro:IPR015151), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Adaptor protein complex, beta subunit (InterPro:IPR016342), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: Adaptin family protein (TAIR:AT4G23460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:16299eggNOG:COG5096eggNOG:KOG1061EMBL:AF216385EMBL:AL163815EMBL:CP002688EnsemblPlants:AT5G11490
EnsemblPlants:AT5G11490.1entrez:831021ExpressionAtlas:Q9LDK9Gene3D:1.25.10.10Gene3D:3.30.310.10GeneID:831021Genevisible:Q9LDK9
GO:GO:0005794GO:GO:0006886GO:GO:0008565GO:GO:0016192GO:GO:0030131GO:GO:0030665GO:GO:0043424
hmmpanther:PTHR11134hmmpanther:PTHR11134:SF4HOGENOM:HOG000294128InParanoid:Q9LDK9IntAct:Q9LDK9InterPro:IPR002553InterPro:IPR011989
InterPro:IPR012295InterPro:IPR015151InterPro:IPR016024InterPro:IPR016342InterPro:IPR026739PANTHER:PTHR11134PaxDb:Q9LDK9
Pfam:PF01602Pfam:PF09066Pfam:Q9LDK9PhylomeDB:Q9LDK9PIR:T48508PIRSF:PIRSF002291PRIDE:Q9LDK9
PRO:PR:Q9LDK9ProteinModelPortal:Q9LDK9Proteomes:UP000006548Reactome:R-ATH-432720RefSeq:NP_196710.1SMART:SM01020SMR:Q9LDK9
STRING:3702.AT5G11490.2SUPFAM:SSF48371TAIR:AT5G11490UniGene:At.5131UniProt:Q9LDK9
Coordinates (TAIR10) chr5:+:3671964..3676144
Molecular Weight (calculated) 93271.20 Da
IEP (calculated) 5.10
GRAVY (calculated) -0.13
Length 841 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPPAASQRY PSPSQPSGKS EVSDLKTQLR QLAGSRAPGV DDSKRDLYKK VISYMTIGID VSSVFGEMVM CSATSDIVLK KMCYLYVGNY AKGNPDLSLL
101: TINFLQRDCK DEDPMIRGLA LRSLCSLRVP NLVEYLVGPL GSGLKDNNSY VRTIAVTGVL KLYHISPSTC IDADFPATLK SLMLHDSDAQ VVANCLSALQ
201: EIWSLEASHS EEACREKESL LSKPVIYYFL NRIKEFNEWA QCLILELAVK YVPSDSNDIF DIMNLLEDRL QHANGAVVLA TVKVFLQLTL SMTDVHQQVY
301: ERIKSPLLTL VSSGSPEQSY AILSHLHLLV VRAPFIFAAD YKHFYCQYNE PSYVKKLKLE MLTAVANESN TYEIVTELCE YAANVDIAIA RESIRAVGKI
401: ALQQYDVNAI VDRLLQFLEM EKDYVTAETL VLVKDLLRKY PQWSHDCISV VGGISSKNIQ EPKAKAALIW MLGEYAQDMS DAPYVLENLI ENWEEEHSAE
501: VRLHLLTAAM KCFFKRAPET QKALGTALAA GIADFHQDVH DRALFYYRVL QYDVHVAERV VSPPKQAVSV FADTQSSEIK DRVFDEFNSL SVIYQKPSYM
601: FTDKEHRGPF EFSDEVGNIS ITPEASSDIV PAQQYEANDK DLLLGIDEKD ENKGVSNNNG SAYTAPSLES SSNITSQMQE LAISGPATSA TTPQSFGFDD
701: LFGLGLSTAP APTPSPPLLK LNARAALDPG AFQQKWRQLP ISLTQECSVN PQGIAALTVP QSLIKHMQSH SIHCIASGGQ SPNFKFFFFA QKESEPSNYL
801: TECIINTSSA KAQIKVKADE QSTCQAFTTV FETALSKFGM P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)