AT5G11480.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: barrier septum formation; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding protein, HSR1-related (InterPro:IPR002917), GTP-binding protein, ribosome biogenesis, YsxC (InterPro:IPR019987); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G22870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:3669350..3671471 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35662.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.80 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||
| Length | 318 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MILAHLPRFH LSILAKPSFS LSSSHFSFLN PKPSVTVSRT LFSFASKSNL ATVEPIPLSV SDSTDLDDAP VEIALDKLFI PPETDISGED SASLTTRILK 101: GSNIVLSKYA RDAQVVQADY VKSSVKTEDC PADGLPEFAL VGRSNVGKSS LLNSLVRRKR LALTSKKPGK TQCINHFRIN DKWYLVDLPG YGYASAPHEL 201: KQDWNKFTKD YFLNRSTLVS VFLLVDASIP VKPIDLEYAS WLGQNQVPMT LIFTKCDKRK KKKNGGKKPE ANIKEFQDLI QGFFETTPPW IMTSSVTNQG 301: RDEILLHMAQ LRNYWLKH |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)