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AT5G11320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.634
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Flavin-binding monooxygenase family protein
Curator
Summary (TAIR10)
Belongs to the YUC gene family. Encodes a predicted flavin monooxygenase YUC4 involved in auxin biosynthesis and plant development.
Computational
Description (TAIR10)
YUCCA4 (YUC4); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: in 7 processes; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT4G32540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2471-MONOMERBRENDA:1.14.13.168EC:1.14.13.168eggNOG:COG2072eggNOG:KOG1399EMBL:AL360314EMBL:CP002688
EnsemblPlants:AT5G11320EnsemblPlants:AT5G11320.1entrez:831003Gene3D:3.50.50.60GeneID:831003Genevisible:Q9LFM5GO:GO:0000139
GO:GO:0004497GO:GO:0004499GO:GO:0005654GO:GO:0005783GO:GO:0005789GO:GO:0005794GO:GO:0005829
GO:GO:0009851GO:GO:0009911GO:GO:0010229GO:GO:0047434GO:GO:0048825GO:GO:0048827GO:GO:0050660
GO:GO:0050661GO:GO:0055114gramene_pathway:2.1.1.-gramene_pathway:PWY-581hmmpanther:PTHR23023hmmpanther:PTHR23023:SF37HOGENOM:HOG000240759
InParanoid:Q9LFM5InterPro:IPR000103InterPro:IPR023753KEGG:ath:AT5G11320KO:K11816OMA:FISYVESPaxDb:Q9LFM5
Pfam:PF00743Pfam:Q9LFM5Pfscan:PS51257PhylomeDB:Q9LFM5PRIDE:Q9LFM5PRINTS:PR00469PRO:PR:Q9LFM5
ProteinModelPortal:Q9LFM5Proteomes:UP000006548RefSeq:NP_196693.1RefSeq:NP_850808.1SMR:Q9LFM5STRING:3702.AT5G11320.1SUPFAM:SSF51905
TAIR:AT5G11320tair10-symbols:YUC4UniGene:At.32275UniPathway:UPA00151UniProt:Q9LFM5
Coordinates (TAIR10) chr5:-:3611429..3613361
Molecular Weight (calculated) 45408.20 Da
IEP (calculated) 9.89
GRAVY (calculated) -0.08
Length 411 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTCRESEPT QIFVPGPIIV GAGPSGLAVA ACLSNRGVPS VILERTDCLA SLWQKRTYDR LKLHLPKHFC ELPLMPFPKN FPKYPSKQLF ISYVESYAAR
101: FNIKPVFNQT VEKAEFDDAS GLWNVKTQDG VYTSTWLVVA TGENAEPVFP NIPGLKKFTG PVVHTSAYKS GSAFANRKVL VVGCGNSGME VSLDLCRYNA
201: LPHMVVRNSV HVLPRDFFGL STFGIAMTLL KWFPLKLVDK FLLLLANSTL GNTDLLGLRR PKTGPIELKN VTGKTPVLDV GAISLIRSGQ IKVTQAVKEI
301: TRNGAKFLNG KEIEFDSIIL ATGYKSNVPD WLKENSFFTK EGMPKTPFPN GWKGEKGLYT VGFTRRGLSG TAYDAVKIAE DITDQWMKFN GPLSCRNICS
401: SHIIHLHFNK S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)