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AT5G11310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G49730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AK229100EMBL:AL360314EMBL:CP002688EnsemblPlants:AT5G11310EnsemblPlants:AT5G11310.1
entrez:831002Gene3D:1.25.40.10GeneID:831002Genevisible:Q9LFM6GO:GO:0005634GO:GO:0005739GO:GO:0005829
GO:GO:0009788GO:GO:0009845GO:GO:0010029Gramene:AT5G11310.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF432HOGENOM:HOG000237900
InParanoid:Q9LFM6InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT5G11310OMA:SKILKMMPaxDb:Q9LFM6Pfam:PF01535
Pfam:PF13041Pfam:Q9LFM6Pfscan:PS51375PhylomeDB:Q9LFM6PRIDE:Q9LFM6PRO:PR:Q9LFM6PROSITE:PS51375
ProteinModelPortal:Q9LFM6Proteomes:UP000006548RefSeq:NP_196692.1SMR:Q9LFM6STRING:3702.AT5G11310.1TAIR:AT5G11310TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.32277UniProt:Q9LFM6
Coordinates (TAIR10) chr5:+:3606490..3608409
Molecular Weight (calculated) 68341.20 Da
IEP (calculated) 8.26
GRAVY (calculated) -0.24
Length 602 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSLFTAFRR NLLLNPNPHR NFFLHRLLSS SRRSSPLIPV EPLIQRIQSP AVPDSTCTPP QQNTVSKTDL STISNLLENT DVVPGSSLES ALDETGIEPS
101: VELVHALFDR LSSSPMLLHS VFKWAEMKPG FTLSPSLFDS VVNSLCKARE FEIAWSLVFD RVRSDEGSNL VSADTFIVLI RRYARAGMVQ QAIRAFEFAR
201: SYEPVCKSAT ELRLLEVLLD ALCKEGHVRE ASMYLERIGG TMDSNWVPSV RIFNILLNGW FRSRKLKQAE KLWEEMKAMN VKPTVVTYGT LIEGYCRMRR
301: VQIAMEVLEE MKMAEMEINF MVFNPIIDGL GEAGRLSEAL GMMERFFVCE SGPTIVTYNS LVKNFCKAGD LPGASKILKM MMTRGVDPTT TTYNHFFKYF
401: SKHNKTEEGM NLYFKLIEAG HSPDRLTYHL ILKMLCEDGK LSLAMQVNKE MKNRGIDPDL LTTTMLIHLL CRLEMLEEAF EEFDNAVRRG IIPQYITFKM
501: IDNGLRSKGM SDMAKRLSSL MSSLPHSKKL PNTYREAVDA PPDKDRRKSI LHRAEAMSDV LKGCRNPRKL VKMRGSHKKA VGEDINLIDD INERNGDAGD
601: FE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)