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AT5G11280.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.814
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80200.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IW7TeggNOG:ENOG410YBP2EMBL:AY045872EMBL:AY113954EMBL:CP002688EnsemblPlants:AT5G11280EnsemblPlants:AT5G11280.1
entrez:830998GeneID:830998GO:GO:0016021Gramene:AT5G11280.1hmmpanther:PTHR35288hmmpanther:PTHR35288:SF1KEGG:ath:AT5G11280
OMA:PLMSSSKPhylomeDB:Q94AQ7Proteomes:UP000006548RefSeq:NP_568247.1TAIR:AT5G11280TMHMM:TMhelixUniGene:At.20347
UniProt:Q94AQ7
Coordinates (TAIR10) chr5:+:3597321..3598347
Molecular Weight (calculated) 22855.70 Da
IEP (calculated) 10.47
GRAVY (calculated) 0.38
Length 209 amino acids
Sequence (TAIR10)
(BLAST)
001: MANPGQSKGW IKKWTSMASS VYFVLILFQI PLFRVPCRSG MCSSPIHVTS SQLISSEIFP VPMIKALLYP GAVVNGLAIN MTFPKWENVL DIYNLTNVKE
101: ASAVTDLQRL EVLAGSYFSV AGAFVGLLKP GRMSMFGSLL LVWGLVKEGI LGKPVNTDPA KTVYVYPTMV LAMICAFSMI KYDLRKATRA APARPIAKPL
201: MSSSKSKLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)